Gene Pnec_1319 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1319 
Symbol 
ID6183267 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1143504 
End bp1144391 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content44% 
IMG OID641671880 
ProductTPR repeat-containing protein 
Protein accessionYP_001798053 
Protein GI171463940 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000490816 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value8.5993e-22 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGGGGG CGTATGAATG CCATGACCCA GAGTTTTTTG AAATCTATGC CTTGGATAAT 
GGCTGGGATG ATGGCGGCAT TTTGAGGCCT CGGATGAAAG ATGCTTTTAA AGAAATGATC
GACATTAATC AGAAGACGGA TCTGGAAGTT ATTCAATTAA TTCAGGATTT GAACATTGAT
ATCCTGGTCA ACTTAAACGG CTATTTTGGT GAAGGGCGTC AAAATATTTT TGCTTCGCAC
CCGGCGCCCA TACAAGTAAA TTATTTAGGG TTCCCAGGAA CCTTGGGCGC TGAATATGTG
GATTATTTAA TAGCCGATCC AATAGTGATC CCACTCGAAA GTCGTCAGTA TTACGTGGAA
AAAATTGCTT ATATGCCTGA TAGTTATCAG GCTAATGATT CGAAGCGCAT GATTTCTGAG
AGGAAGTTTT CCAGGACGGA GTTGGGTCTG CCGGAAGCTG GTTTTGTCTA CTGTTGTTTT
AACAACAATT ACAAAATTAC ACCTGAAATT TTTGATCGTT GGACACAAAT ACTGTTAGCA
GTAGAGGGAA GTGTTTTGTG GTTGATTCAG GATAATGCTC CAGCTGAAAA AAACCTAAAG
GCCGAGGTAT TGAAAAGAGG CGTTGCTCCT GAGCGCATTA TTTTTGCGAA AAGATTGTCC
CTGCCGGAGC ACTTAGCTCG TCACAAAATG GCAGATCTTT TCTTAGACAC CCTTCCTTAC
AATGCTCACA CTACTGCAAG CGATTCGCTT TGGGCTGGTG TGCCGGTATT GACTCTTCTG
GGCAGCACTT TTCCAGGTAG GGTTTCAGCA AGCCTGCTAA ACGCGCTTGA CCTGCAAGAG
CTGTTGCTAA AACACCAGAA GAATGCGAGC AGCGCGCGAT TGAATTAG
 
Protein sequence
MTGAYECHDP EFFEIYALDN GWDDGGILRP RMKDAFKEMI DINQKTDLEV IQLIQDLNID 
ILVNLNGYFG EGRQNIFASH PAPIQVNYLG FPGTLGAEYV DYLIADPIVI PLESRQYYVE
KIAYMPDSYQ ANDSKRMISE RKFSRTELGL PEAGFVYCCF NNNYKITPEI FDRWTQILLA
VEGSVLWLIQ DNAPAEKNLK AEVLKRGVAP ERIIFAKRLS LPEHLARHKM ADLFLDTLPY
NAHTTASDSL WAGVPVLTLL GSTFPGRVSA SLLNALDLQE LLLKHQKNAS SARLN