Gene Pnec_1287 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1287 
Symbol 
ID6183188 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand+ 
Start bp1113961 
End bp1114407 
Gene Length447 bp 
Protein Length148 aa 
Translation table11 
GC content44% 
IMG OID641671853 
Productputative transmembrane protein 
Protein accessionYP_001798026 
Protein GI171463913 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.22951 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value0.293461 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAT CCAAACTTCT TTTTTGCTCG CTCGGTTTAC TCTTCCCAGG AAGTGGACTC 
AATTGCTTTT ACCTACAGGG ACTCAAATCC TTTTGGGCTT GGGTGCAGTT ATTTGCCTTA 
ATTGGTGGCG CAGCCGGCTG GGTCATTTTG AAAAATACCC ACTTTCATTC GACACCGGGA 
TGGGTGCTGA TTACCTTTGG CTTTATTGCA ATTGAAGCAA GCTGGCTAAT GACGATTTCC 
TTTGGCCTGC GTCTTGATGA AAAGTGGGAT GCGCAACTTA ACCCTGGCAT TGAAGAACAT 
CGCCGCAGCC GCTCGGGCTG GCTAGAGATA TTAACAGTGA TCTTTTCTTT GGTATTTGGC 
GCTGGTGTGA TGATGACTTT TTTAGCCGTC TCTTTTGAGC AATTCTTCAT CTCGCAAATT 
TATGAAGCAA AAAAGCTATC CCAATAA
 
Protein sequence
MKKSKLLFCS LGLLFPGSGL NCFYLQGLKS FWAWVQLFAL IGGAAGWVIL KNTHFHSTPG 
WVLITFGFIA IEASWLMTIS FGLRLDEKWD AQLNPGIEEH RRSRSGWLEI LTVIFSLVFG 
AGVMMTFLAV SFEQFFISQI YEAKKLSQ