Gene Pnec_0981 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0981 
Symbol 
ID6182847 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand+ 
Start bp852462 
End bp853370 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content48% 
IMG OID641671601 
ProductTetratricopeptide TPR_2 repeat protein 
Protein accessionYP_001797780 
Protein GI171463667 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.878212 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones80 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCCGT TTCACACCCC TTCCTCTATG CCCCACAACG TCCCAGCGCC ACGCCCTGCC 
TTGATTAAGG TCTTTGCCCC AGCTTTTGCC GCTTTAGCGC TCTTATCTGG CTACAGTACA 
CCTGCCCAGC AACGCGCTGA TGCAGAAATT GCCGCATTGA ATGTCCAAGG AGCAACCGAC 
TCCCAATGCG CGCCTCAGTC GTACTTAGGC GGCTACAGCC CAATTGACCC CCCAAGACTG 
TCGGCAGATA TGGGTTACGA CCCATTAAGC CCTGAATTAT CTGAAACCGT TGGTGTGCCA 
TTTTTATCCT TCTTGATTAT TGAGCCAGAC CCCATTACTA AGAATGCAGT TCCCTCAGAT 
GTGGAAAAAC TCATCAAGGC GCACAAGTAT CAAGATGCAA TCACTCAAAT CAATATCAAT 
TTAAAGAAGG CTCCCCGTAA CGTGCAATTG CGTTTTGTAA AAGCACGTCT ACAAATTGAG 
TTGCGTCAAT TTGATCAGGC CAAAAAGTCT TTGATCGAAA TTACACAACA GTTCCCAGAG 
TTACCTGAGC CCTACAATAA TCTTGCGGCG ATTGCCGCGA ACCAGGGCCA GTGGATTGAA 
GCTCGAGACT ATCTTGAGCT TGCCCTCAAA CTGCGACCTA GCTATGCAAT AGCCTCGACT 
AATTTAGGCG AAATTTATGT GCGACTCGGT GCTCAGGCGT ATGAAGACGC AGCAAAGAAT 
GAACTCAATC AACCTCAGTA CTCTAATCGT GCCAAAGCCC TCTTAGACAT TCTCAAGCCA 
CCATCAAAAC GCCCCATCAA TCGCGCACCA AGCACAAGCA TGGGGGATTC ATTACCAAGC 
AATAATCCCC CCACCAACCT TCCAGAAAGT CGATCTAATA ATGACGAAAG TTCTCCTAAA 
AACCAATAA
 
Protein sequence
MSPFHTPSSM PHNVPAPRPA LIKVFAPAFA ALALLSGYST PAQQRADAEI AALNVQGATD 
SQCAPQSYLG GYSPIDPPRL SADMGYDPLS PELSETVGVP FLSFLIIEPD PITKNAVPSD 
VEKLIKAHKY QDAITQININ LKKAPRNVQL RFVKARLQIE LRQFDQAKKS LIEITQQFPE 
LPEPYNNLAA IAANQGQWIE ARDYLELALK LRPSYAIAST NLGEIYVRLG AQAYEDAAKN 
ELNQPQYSNR AKALLDILKP PSKRPINRAP STSMGDSLPS NNPPTNLPES RSNNDESSPK 
NQ