| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0550 |
|---|
| Symbol | |
|---|
| ID | 6182875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 489907 |
|---|
| End bp | 491418 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641671228 |
|---|
| Product | 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein |
|---|
| Protein accession | YP_001797424 |
|---|
| Protein GI | 171463311 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.137007 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCATC AATCACCCTC AAGTTGGGCC GTAATCTGCG TCTTTATTGC TGCAGTGATT
CATTTGGCCC TAGGCTTTTC AATCGAATTT TCAGTAGATG AAGCTCACTA TGCTTTGTAT
GCCCAACACT TGGCATTGAG TTATTTTGAT CACCCGCCCT TGGTAGGTTG GATTCAGTGG
CCTTTAGTAG CTCTCACCTC TTCGGAGGGT GTCATTCGTT CCATTCCAGA GCTACTGTGG
ATTATTTCTT GCTACTTGGT CTACAGAGTA ACTATTGAAA TACACCGCCT CATACAAGGA
CGGAACGCAG GCTATCTCAC GAGTACACTT CCATCAGCAA ATTTATGTGG CCTATTTGCA
GTATTAGTCG TCAGTGCCGC CCCTATGCTA CATGTTTTAG CAATTGGTTT ATTGCCAGAT
ACCCTATTGG CACCTTTAAG CCTTGGTTTA ATGTTGATGG CTCTTCGTTG GTTGAGAAAG
GATCAATTTA GTATTGGCGA CTGGATTCTA ACTGGCGCTC TATTAGGTCT GGCTGGTCTT
AGCAAATACA CGGCTGCCTT CACCGCATTT GCTTTCCTCT TTGTATTTCT TAGCACTCCG
AGAAAATCAT GGTTAACTAA AGCTGGCTTC TGGCTAGCCT TATTATTGGC CTTACTCATC
ATCACTCCCG TCCTGTATTG GAATTGGACT AACGATTGGA TTTCATTTAA ATATCAGCTC
GCCCACGGTG GTGGTAGTGA ATGGCTCTGG CGCAGATTAG CCGCCTATGT CGGCATCCAA
ATCGCTGTAT TTGGGCCGGT ATTGATCTTG GGGAGTTTTA TTTTTCTCAA AGACTGCATG
CATGGCAGCA AACTGTCCTT ACTTGCACTC TTAGGATTCT TTTTAATTCC CTTTGCGATC
TTTACCGGAC TTTCTGGTGG AGGTGGCCTG CCTCACTGGA CTTCACCCGC ATGGTTTTGC
CTTGCACCCT TTGCCGGCAT TGGCTTAGCA AAAACATGGG CAATGCAACA CCGAAATTGG
ATTCGCATTT TATTTTGCAT TCAAATGACT CTCTGTTGCA TCGGCTTTGG CTATGTCTTA
TCTGGTGGCA TCAGCTCAGC TTCGATTAAA TCTAATCCGA TTGCAGATTT ATATGGGTGG
AAAGTTGCCG GCCAAAAATC AGCAGTGTTA GCAAAAGCCA CTAAAGCCGA TGGCATTGCC
GTTCAGAACT GGACTTTAGG CAGCCGTGCT GCTTGGTACG CATCTCCGAC TCCGGTGTTC
GTCTTAGATC AGCAACAAGA TCAATTCGAC CTCTGGTTTG AGAAACTCCC AATTGGGGCA
AATATTCTCC TAATTAACTG GTCTGGCATG CCCTATGCTG CACCAGTAGG CAATAATTCG
GGATTTCAGG TATGTGAGCC CTTAGATAGC CTAGAAATTG TGCGATTTGG CCGAGTTTTA
TCCAAATTTG ACTTTAGCCT TTGCAGTAAC TGGCAAGGCC TCAGAGTAAT TCCCCCAAAC
TCAAGACCTT AG
|
|---|
| Protein sequence | MRHQSPSSWA VICVFIAAVI HLALGFSIEF SVDEAHYALY AQHLALSYFD HPPLVGWIQW
PLVALTSSEG VIRSIPELLW IISCYLVYRV TIEIHRLIQG RNAGYLTSTL PSANLCGLFA
VLVVSAAPML HVLAIGLLPD TLLAPLSLGL MLMALRWLRK DQFSIGDWIL TGALLGLAGL
SKYTAAFTAF AFLFVFLSTP RKSWLTKAGF WLALLLALLI ITPVLYWNWT NDWISFKYQL
AHGGGSEWLW RRLAAYVGIQ IAVFGPVLIL GSFIFLKDCM HGSKLSLLAL LGFFLIPFAI
FTGLSGGGGL PHWTSPAWFC LAPFAGIGLA KTWAMQHRNW IRILFCIQMT LCCIGFGYVL
SGGISSASIK SNPIADLYGW KVAGQKSAVL AKATKADGIA VQNWTLGSRA AWYASPTPVF
VLDQQQDQFD LWFEKLPIGA NILLINWSGM PYAAPVGNNS GFQVCEPLDS LEIVRFGRVL
SKFDFSLCSN WQGLRVIPPN SRP
|
|---|
| |