Gene Pnec_0549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0549 
Symbol 
ID6183098 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand- 
Start bp488837 
End bp489880 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content47% 
IMG OID641671227 
Producthypothetical protein 
Protein accessionYP_001797423 
Protein GI171463310 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00564002 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones77 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTCAC AAGCCCAGCC TACTCCCAAA ACCCAATCGG GGTGGAAAAC CATTCTTAAG 
CGAGCTTGGC CAAGCATTCG CATTTTTCTA TCCGTTGCGC TACTTTGGAA AGCCACCAGC 
GGAATTGATT GGCATTCGCT GTTTGATACT CATATTCAGA TGCAGCCCTT ATGGTTCTTG 
GCAGCTTTAG CAAGCATGAT GTGCGCCTTT ATTTGTGGTG GTTATCGCTG GGGGTTATTC 
ATGCAGGCTG TCGGCTTCCC CCGTCGCATT CACTCTTACA TTGGCCTGTA CATTGCAGGC 
GGCTTAATTA ATCAAGGTTT ACCAAGCACC CTAGGTGGCG ATAGCTATCG AGCCATTACT 
GCAACCCACT TAACGAGCTC CGGCAATCTA TCAGAAACCA AAGAGCTAGA CGAAGAACTG 
CATCACTCGG TAGATTTAGA GCACGCTACA CCTAAGTTGC GTTTGAGTTT TTCGATGGTG 
TTAGTAGATC GCCTTCTAGG CTTAGCAGGA AATAACTTAC TGGGCGCCAT TGGATTGATA 
TTAGGCGGCA CCTCATTAGC AACCTGGGGC CAAGACTTGG GCTATGCAAT GATGGCAGCA 
ATGTTGTTGG CTGGCGTAGC GATTGCACTT GTTTTAGCTT GGGGTCCTAG TAAACAGCTT 
CTACAAAAAC TCCTAGATCG CTTCAATATG AATCATGCAA TGCCTGGGAT CCAGCTTGCA 
TTTGCGTGGC CCAATAATAT TGCTCAGGCA TGCTTAGCAA TTGGAATTCA CTTTCTCACC 
ATCTTGACTC TACTGTTTTG TCTCAAAGCT TATGGCGTGG ATGCTCCTAT TGAAGGCCTC 
ATGATTGGCT TGCCTGCACT GAGCCTGCTG CTCATGTTGC CCATTAGCAT CTCAGGGTGG 
GGATTACGTG AAACCACGCT GTCATCCATT TTGGCTTTAT GGGGAGTAAA CCCCTCACTA 
ACGGTGCTAG CCTCAATTAG CTATGGCGCG ATTACAGTTT TATCGATTCT ACCTGGCTCG 
TATTTTTTAT TAAAACGAAA ATAA
 
Protein sequence
MSSQAQPTPK TQSGWKTILK RAWPSIRIFL SVALLWKATS GIDWHSLFDT HIQMQPLWFL 
AALASMMCAF ICGGYRWGLF MQAVGFPRRI HSYIGLYIAG GLINQGLPST LGGDSYRAIT 
ATHLTSSGNL SETKELDEEL HHSVDLEHAT PKLRLSFSMV LVDRLLGLAG NNLLGAIGLI 
LGGTSLATWG QDLGYAMMAA MLLAGVAIAL VLAWGPSKQL LQKLLDRFNM NHAMPGIQLA 
FAWPNNIAQA CLAIGIHFLT ILTLLFCLKA YGVDAPIEGL MIGLPALSLL LMLPISISGW 
GLRETTLSSI LALWGVNPSL TVLASISYGA ITVLSILPGS YFLLKRK