| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0337 |
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| Symbol | |
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| ID | 6183028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 299564 |
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| End bp | 301369 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641671044 |
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| Product | thiamine pyrophosphate protein TPP binding domain protein |
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| Protein accession | YP_001797243 |
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| Protein GI | 171463130 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0911018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 0.142003 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTAT CAGATTACGT CGCTCAAAAA GTTGTTGAAA ATGGAGTGAA GCATGTTTTC
ATGGTGACTG GTGGAGGTGC TATGCATCTT AATCATTCTT TTGGAACACG CAAAGATCTC
GAATGCATTT TTAACCATCA TGAGCAAGCA TGTGCCATTG GCGCAGAAGC ATATTATCGA
TTAACCAATC GGTTGCCAAT AGTAAATGTA ACCTCAGGCC CTGGTGGTAC AAATGCTATT
ACTGGAGTTT ATGGCGCATT TGTAGATTCA GTAGCTATGC TGGTTATTTC CGGACAAGTG
AAATGGGAGA CTACCGTACG AAGTACTGGC CTTCCATTGC GTCAATATGG CGATCAAGAA
TTAGATATTG AAGAATTGGT TAGGCCTGTT ACAAAATATT GCGAGATGGT CACGGACCCC
CAAACAATTC GTTACCATTT AGAAAAAGCC ATTTATTTAG CTCAATCGGG TCGTCCAGGA
CCATGTTGGT TAGATATCCC TTTGAATGTT CAGGGCGCGC AAATTGACCC TGATGCATTG
GTTGGTTTTG ATCCGGCCGA ATTAGAGGAG CCATGGAAAA AGACTGATCT TAAAAGGGTT
AGCAAAGATA TCCTTGATAA AGTGAGAGCG GCGAAGCGAC CGGTTGTATT TGTCGGTGGC
GGTATTCGCT TGAGTGGTGA ACATAAGAGT TTTTTAAAGC TAGTTGAAAA ATTGCAAATT
CCAGTTGTAA CGGGCTGGAA TGCGCATGAT GTCATCTGGA ATTCTCATCC TAACTATGCT
GGTAGACCTG GCACTATTGG CGATCGTGCT GGTAATTTTG TTACACAGAA TGCAGATTTG
CTGCTAGTTC TTGGAAGTCG CTTGAATATT CGGCAGGTCA GCTACAACTG GCAGTCTTTT
GCTCGCGAAG CTTTTAAGAT CTGGGTTGAC ATTGACGAAC TTGAGCTGAA AAAGCCTTCC
GTTAAAGCGG ATATGCCCAT ACATGCTAAT TTAAAAGACT TATTACCAAT CTTAGCTGGC
GCAAGATATG AGGGTGCAAC TCCAGAGCAT AAAGAGTGGA TGGAGTGGAG TAAAGAGCGC
ATGCGCAGAT TCCCTACTGT ACTGCCAGAA TATCGTGAAA ATAATCGCGT CAATCCTTAT
TGCTTTGTGG ATGAACTATT TAAGCAATTA AAAGATGATC AAATCGTAGT GACCGGCAAT
GGAAGTGCGT GCGTAGTCAG TTTTCAGGCG GCAGATTTAA AGCCTGGTCA GCGTCTTTGG
ACAAACTCAG GTTGTGCCAC AATGGGTTAT GACCTACCGG CATCAATTGG TGCTCATAAA
GCATCCGGTG GAAAGTCTAT TGTTTGTTTA GCTGGGGACG GCAGCATTAT GATGAACTTA
CAGGAATTGC AAACAATTGC GGGTAATCAG ATTCCTGTAA AGATATTCAT TTTAAATAAC
AGCGGTTATG TATCTATATT TCAAACGCAT CGTAACTTTT TTAATGGCGT TGAAGTTGGT
GGTGGCCCTA AGAGTGGGGT TACATTCCCG AGTTTTGAAA AGCTAAGCGC TGCTTTCGAC
TTGCCTTATC TAAGGGTTGA AAACCATTCG CAAATGCAAG ATGCAATTGA GGCAACTCTC
CAAGAAGTTG GCCCTTGTGT ATGTGAAATT ATGATTGATG AGAGTGTGGT GTTTGCACCA
AAACTAGGCG CAAAGCAACA CCCGGATGGG CGCATCACTT CTCCCCCTCT TGAGGATCTC
TCCCCTTTCT TGTCTCGTGA AGTATTAAGA GAGAATATGA CAATTGAATC CCCGCAAGAG
GAATAA
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| Protein sequence | MKLSDYVAQK VVENGVKHVF MVTGGGAMHL NHSFGTRKDL ECIFNHHEQA CAIGAEAYYR
LTNRLPIVNV TSGPGGTNAI TGVYGAFVDS VAMLVISGQV KWETTVRSTG LPLRQYGDQE
LDIEELVRPV TKYCEMVTDP QTIRYHLEKA IYLAQSGRPG PCWLDIPLNV QGAQIDPDAL
VGFDPAELEE PWKKTDLKRV SKDILDKVRA AKRPVVFVGG GIRLSGEHKS FLKLVEKLQI
PVVTGWNAHD VIWNSHPNYA GRPGTIGDRA GNFVTQNADL LLVLGSRLNI RQVSYNWQSF
AREAFKIWVD IDELELKKPS VKADMPIHAN LKDLLPILAG ARYEGATPEH KEWMEWSKER
MRRFPTVLPE YRENNRVNPY CFVDELFKQL KDDQIVVTGN GSACVVSFQA ADLKPGQRLW
TNSGCATMGY DLPASIGAHK ASGGKSIVCL AGDGSIMMNL QELQTIAGNQ IPVKIFILNN
SGYVSIFQTH RNFFNGVEVG GGPKSGVTFP SFEKLSAAFD LPYLRVENHS QMQDAIEATL
QEVGPCVCEI MIDESVVFAP KLGAKQHPDG RITSPPLEDL SPFLSREVLR ENMTIESPQE
E
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