| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0183 |
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| Symbol | ddl |
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| ID | 6184406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 164515 |
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| End bp | 165528 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641670903 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001797102 |
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| Protein GI | 171462989 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0000736036 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 64 |
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| Fosmid unclonability p-value | 0.566039 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTTAATG TCGGTGCTAA TTTGAGCTCC TGGGGTGATC GTGTGAAGTC CAGCTTGGCC
GGCATGGATC TTAAGTCTTT AGGTCGTGTT GGGGTACTGC TCGGGGGTAA ATCTGGTGAG
AGAGAAATTT CTCTCATGTC TGGCAATGGC GTTTTGGAAG CGCTGCGTTC AAAAGGCGTC
GATGCTCATG CCTTTGATGC TGGCTTGCGC TGTCCAACTG AGTTAGTCAA AGAAAAATTT
GATCGTATTT TTATTTCCTT ACATGGTCGC TTTGGTGAGG ATGGAACTAT TCAAGGGTTA
CTGGAGTTAT TGGGTTTGCC TTATACTGGC AGTGCTGTAT TGGCTTCTGC TTTAGCAATC
GACAAAATTG TCACTAAGCA AGTTTGGATT AGCAATGGTC TCGCTACTCC TGAGTATGAA
GAATTGACTG CGACAAGTGA TTGGAATGCA GTCGTTCAAC ACTTAGGCTT GCCATTAATT
GTGAAGCCTG CGCATGAAGG TTCCTCTTTA GGTTTAACCA AAGTTAAGTC AGTCGAAGAA
TTGCCAGCTG CTTACAAGCT TGCCGCTGGT TTGGATAAAA AAGTAATTGC AGAAACCTGC
ATTATTGGTG ATGAGCTCAC TTGCCCATTG GTCGGGCAGG GTAAAACAGC TGAAGCGTTG
CCCGTGATCA AAATAATTCC GCCACAAGCA AATTACGATT TTCATAATAA GTACTTCTCT
GATGAAACTC AGTACTTATG CCCAACTGGA CTTGCGCCAG AAGTGAATGC CGCAGTGCAA
ACATTGGCCT TGGCAGCATA TAAAGCATTG GGTTGTCGTA CATGGGGTCG AGCTGACGTC
ATGTTGGATC AAAAAACTGG CAAACCTTAT TTGTTGGAGA TGAATACTTC TCCTGGTATG
ACATCCCATT CATTGGTGCC AATGGCTGCT AAAGCCGCTG GTATTGAGTA TGCGGATTTA
GTGCTGTGGT TATTAAGTCA AACATTGCAG CAAAAAGAGG GCGCCACTAC ATGA
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| Protein sequence | MFNVGANLSS WGDRVKSSLA GMDLKSLGRV GVLLGGKSGE REISLMSGNG VLEALRSKGV
DAHAFDAGLR CPTELVKEKF DRIFISLHGR FGEDGTIQGL LELLGLPYTG SAVLASALAI
DKIVTKQVWI SNGLATPEYE ELTATSDWNA VVQHLGLPLI VKPAHEGSSL GLTKVKSVEE
LPAAYKLAAG LDKKVIAETC IIGDELTCPL VGQGKTAEAL PVIKIIPPQA NYDFHNKYFS
DETQYLCPTG LAPEVNAAVQ TLALAAYKAL GCRTWGRADV MLDQKTGKPY LLEMNTSPGM
TSHSLVPMAA KAAGIEYADL VLWLLSQTLQ QKEGATT
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