| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tneu_1548 |
|---|
| Symbol | |
|---|
| ID | 6165413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermoproteus neutrophilus V24Sta |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010525 |
|---|
| Strand | - |
|---|
| Start bp | 1373672 |
|---|
| End bp | 1374949 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641668706 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001794918 |
|---|
| Protein GI | 171185999 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00297769 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGAATCA AGTTCCTCGG CGGCGCGGGG GAGGTTGGGA GACTTGCCGT ATTTATAAAG
ACGGCGGCCA ACGGAGTTCT GCTCGACTAC GGCGTTTCGT TTGACGCGGA GGATAAGCCC
GTGTTTCCCC TTCACGTGCG GCCTAAGGAT CTAACGGCGA CTTTTCTGAG CCACGCCCAT
CTAGATCACA GCGGCGGACT CCCATCTCTC TACGTCTCAA CTAGAACACC TCTGTATTCC
ACACCGCTGA CGATGGAGCT AAGCGACTTG ATGTACACAG ACGCCATAAA GCTCTCGGGC
TACTACCTGC CCTACACCCA GGAGGAGGTT CGCGAAACTA TGGCGAGCGC CGTGCCGCTC
ACCTATGGCG AGCCCGTGGA AATAGGCAGA GACGCGGTGT TGACCGCCTA TAACGCCGGG
CACATCCCCG GTAGCGCCAT AGGCGTGCTA GAGATCGAGG GGCGTGTGGT CGTCTTTACC
GGGGATTTCA ACACAGTTGA CACAAATCTG CTAAGGGGGG CCGACTTGTA CAACCTGCCG
AAGGCGCCCG ATGTCGTAAT CATGGAGGCC ACCTACGCCT CCGCCGATCA TCCGCCCCGC
GAAAAGCTCG AGAAAGAGTT TGTACAAGCT GTGAAGGAGG TTTTGGACCA AGGCGGAACT
GTGCTAATAC CGTCTTTTGC CCTCGGTAGA GCGCAGGAGA TTATGTTGAC TCTCGTAAAA
CACGGGGTCA ATGCTCCGAT TTACATAGAC GGTTTGGCCC GCCAGATAAA TCAGATCGTC
GGGAGGTACC CCTACCTGCT GAGAGACCCC ACGCTCTATA GAAAAGCACT TGAGGCCGCG
ATAGAGGTGC CAAATACGTA CGTGAGAAAA GGCGCTATAG AGGAGGCCTC TGTGATTATA
ACGCCTGCCG GGATGTTGAA GGGGGGCGCG GCCCTGTACT ACTTCAAGAG ATTGGCGCAA
AACAGGAAGA ACGGCATCTT CCTGCCCTCC TTCCAAGCCC CCAACACGCC GGGCTTCGAA
ATCCTGAGCA AAGGCCACGC CGTCGTAGAC GGCACCCTTG TGAAAGTAGA GGCGAGGCTC
GAATGGTTCG ACTTCAGCGC GCACGCGGGT AGAAGAGAGA TTGTTCACTT CATCAAGAGG
TTTTCAGCGG ACACAAGGAT CATCTTGGTA CACACGGAGC CCAAGGCGGC CGCCCCCCTC
GTGAGGAGAC TTGCGGGAGA GGGCTTCGAT AACATATACG TGCCAACGGA GCCAGGCGAA
GAGGCGGTGC TACAATAA
|
|---|
| Protein sequence | MRIKFLGGAG EVGRLAVFIK TAANGVLLDY GVSFDAEDKP VFPLHVRPKD LTATFLSHAH
LDHSGGLPSL YVSTRTPLYS TPLTMELSDL MYTDAIKLSG YYLPYTQEEV RETMASAVPL
TYGEPVEIGR DAVLTAYNAG HIPGSAIGVL EIEGRVVVFT GDFNTVDTNL LRGADLYNLP
KAPDVVIMEA TYASADHPPR EKLEKEFVQA VKEVLDQGGT VLIPSFALGR AQEIMLTLVK
HGVNAPIYID GLARQINQIV GRYPYLLRDP TLYRKALEAA IEVPNTYVRK GAIEEASVII
TPAGMLKGGA ALYYFKRLAQ NRKNGIFLPS FQAPNTPGFE ILSKGHAVVD GTLVKVEARL
EWFDFSAHAG RREIVHFIKR FSADTRIILV HTEPKAAAPL VRRLAGEGFD NIYVPTEPGE
EAVLQ
|
|---|
| |