| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4385 |
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| Symbol | |
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| ID | 6161103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4906314 |
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| End bp | 4907993 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641667162 |
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| Product | 60 kDa inner membrane insertion protein |
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| Protein accession | YP_001793401 |
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| Protein GI | 171061052 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000234218 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGACC TGCGGCGCGC GCTGCTCTGG GGCGTTTTCT CCATTTCGCT GGTGATGTTG
TGGGACGGCT GGAGCCGCCA CACCGGCCAG CCCTCGATGT TCGACCCCAA GCCGGCGGCT
CGCAGCGTGC CGCTGGCGGC CAACGGCACC TCGTCGGTGC CCGTGCCTGC TGCGTCGGCT
GCTGCCGGAG CGGCGCTGCC CGTCGCTTCG TCGGCCAGTG CGGCGGCGGT CTCGGCGGCT
GAAAAAGTCG TCCTGACCAC CGACGTGGTC AAGGCCACGT TCGACAGCCG AGGCGGCACG
CTGGTGTCGA TCGAGCTGCT CAAGTACGCC GATCCGTCGA GCGCCAGCGG GCACGTGATG
CTGTTCGACC AGTCGCCGCA GCGCCATTAC ATGGCCGAGT CGGGCCTGAT CGGCACCGGC
CAGCCCGGCA CCTTGCCGGA CCACACCACG CTGATGAACG TGGTTGCGGG CGATCGGACA
CTGGGCGATG GCAAGAGCGA GCTGCAGGCG CGCTTCGAAT CCACCGCGGC CGACGGCGTC
AAGCTCGTCA AGACCTACAC CCTGCGCCGC GGCGACTACG TCATCGACGT GCAGCACGAG
GTGCTCAACC AGGGCGCCGC CGCCGTGAGC CCGCAGCTCT ACCTGCAACT GGTGCGCGAC
GGCAATCCGC TGCCCGATGC ATCGAGCTTC TACAGCACCT TCACCGGCCC GGCGGTCTAC
TCCGAGGCCG GCAAGTTCCA GAAGATCGAG TTCAGCGACA TCGAGAAGCG CAAGGCCGGC
GACAAGGTCG ACCATGTGAC CAGCGCCGAG GACGGCTGGG TGGCGATGGT GCAGCACTAC
TTCGCCGCGG CCTGGTTGCC AGGCGACAAG GTGCAGCGCG AGTTCTTCTC GCGCAAGGTC
AGCGACAACC TCTACGCGGT CGGCATGCTG CTGCCGGTCG GCGAGGTGGC ACCGGCGGCG
AGCAGGAAGA TCGACGCCCG CCTGTTCGTC GGCCCGCAGG AAGAAAAACG CATCGAGGCG
CTGGCGCCCG GGCTCGACCT GGTCAAGGAC TACGGCTGGC TGACGATCCT GTCCAAGCCG
CTGTTCTGGC TGCTGCACAA GCTGCACTCG TACATCGGCA ACTGGGGCTG GGCGATCGTC
GCGCTGGTGG TGCTGCTGAA GGCGGCCTTC TACTGGCTCA ACGCCAGCGC CTATCGCTCG
ATGGGCAAGA TGAAGGCGAT CAACCCGAAG GTGCAGGAAC TGCGCGAGCG CCTGAAGGAC
AAGCCGCAGC AGATGCAGCA GGAGATGATG CGCATCTACC GCGAGGAAAA GGTCAACCCG
CTGGGCGGCT GCCTGCCGAT CTTCGTCCAG ATGCCGTTCT TCATCGCGCT GTACTGGGTG
CTGCTGTCGA GCGTCGAGAT GCGTGGCGCG CCCTGGGTGG GCTGGGTGCA CGACCTGAGC
GTGAAGGACC CGTACTTCAT CCTGCCGCTG CTGATGACCG CCACCACGGT GCTGCAGACC
TGGCTCAATC CGACGCCACC TGATCCGATC CAGGCCAAGA TGATGTGGAT CATGCCGCTG
GCCTTCAGCG TGATGTTCTT CTTCTTCCCG GCAGGTCTGG TGCTGTACTG GTTCACCAAC
AACCTGCTCT CGATCGCCCA GCAATGGATG ATCAACCGGC AGCTCGGGCT GAACAAGTAA
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| Protein sequence | MTDLRRALLW GVFSISLVML WDGWSRHTGQ PSMFDPKPAA RSVPLAANGT SSVPVPAASA
AAGAALPVAS SASAAAVSAA EKVVLTTDVV KATFDSRGGT LVSIELLKYA DPSSASGHVM
LFDQSPQRHY MAESGLIGTG QPGTLPDHTT LMNVVAGDRT LGDGKSELQA RFESTAADGV
KLVKTYTLRR GDYVIDVQHE VLNQGAAAVS PQLYLQLVRD GNPLPDASSF YSTFTGPAVY
SEAGKFQKIE FSDIEKRKAG DKVDHVTSAE DGWVAMVQHY FAAAWLPGDK VQREFFSRKV
SDNLYAVGML LPVGEVAPAA SRKIDARLFV GPQEEKRIEA LAPGLDLVKD YGWLTILSKP
LFWLLHKLHS YIGNWGWAIV ALVVLLKAAF YWLNASAYRS MGKMKAINPK VQELRERLKD
KPQQMQQEMM RIYREEKVNP LGGCLPIFVQ MPFFIALYWV LLSSVEMRGA PWVGWVHDLS
VKDPYFILPL LMTATTVLQT WLNPTPPDPI QAKMMWIMPL AFSVMFFFFP AGLVLYWFTN
NLLSIAQQWM INRQLGLNK
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