Gene Lcho_4321 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4321 
Symbol 
ID6161199 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4834755 
End bp4835984 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content67% 
IMG OID641667098 
Productextracellular solute-binding protein 
Protein accessionYP_001793337 
Protein GI171060988 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.739189 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACAC GCACCATCCG ACTGCTCACC GCGCTGCTCG CCGGCCTGGG CCTGGCCGGC 
GCCGCCCAGG CGCAAAAAGC CGAAGTGATC CACTGGTGGA CGTCGGGTGG CGAATCGGCG
GCCATCAAGG AGTTCGCGGC GGCCTACAAC AAGGCCGGCG GCAACTGGGT CGACTCGGCG
GTGGCCGGTG GCGAAGCCGC GCGGGCCTCT GCGCTGAGCC GCATCGCCGG TGGCAACCCG
CCCGTGGCGG CGCAGTTCAA CACCTCCAAG CAGTACTTCG ACGTCATCGA CGAAGGCCTG
CTCAACAACA TCGACGCCGT GGCCATCAAG GAGGGCTGGG ACAAGCTGCT GCCCGCGCCG
GTGCTCAAGA TGGTGAAGGT CAAGGGCCAC TACTACGCCG CGCCGGTCAA CATCCACAAC
CCGACCTGGT TCTGGTATTC GAAGGCGGCC CTGGCCAAGG CCGGTGCGGC CGAGCCCAAG
ACCTTCGATG AATTCTTTGC CGCGATGGAC AAGCTGAAGG CCGCCGGCCT GGTGCCGCTG
GCGCTGGGCG GACAGGGCTG GCAGGAGCAC ATCACCTTCT ACTCGGTGCT GCTGCACTCG
GGTGGCAAGG ACCTGTACCT GAAGTTCTAC GAAGGCCAGG ATGCCGCCAC CATCGCGACC
CCGGCGTTTC GCAAGGTGCT GGCCGACTTC AAGCGCCTGA AGGGCTACAC CGACGCCGGC
TCGCCCAACC GCAACTGGAA CGACGCCACC GCGATGGTCA TCACCGGCAA GGCCGGCTTC
CAGATCATGG GCGACTGGGC CAAGGGCGAG TTCGTCGCCG CCAAGCAGAC GGCGGGCAAG
GAGTTCGGCT GCATGGCCGG CTTCGGCCCG ACGTCGCCCT ACGTGATTGC GGGCGACGTG
TTCGTCTTCC CCAAGACCAG CGATGCCGCG GCCATCGCCG CGCAGCAGAA GCTGGCCACG
GTGATGACCT CGCCGGCCGC GCAGGTGGCC TTCAACAACA AGAAGGGCTC GATCCCGATC
CGCACCGACG TCGACATGGC GGCGATGGAC GTCTGCGCCC AGGCCGGCGT GACCGCGATG
AAGAACCCGG CCCGCCACAT CGCCAACCCC GACGCGCTGA TGAGCCCGGA CAGGGTCGGC
GCGGTGCAGG ACGTGCTGTC GAAGTTCTGG AACACCAACC AGAGCGTGGA TGACGCCGTC
AAGGCGCTGC AGAACGCGGT CAAGGGCTGA
 
Protein sequence
MTTRTIRLLT ALLAGLGLAG AAQAQKAEVI HWWTSGGESA AIKEFAAAYN KAGGNWVDSA 
VAGGEAARAS ALSRIAGGNP PVAAQFNTSK QYFDVIDEGL LNNIDAVAIK EGWDKLLPAP
VLKMVKVKGH YYAAPVNIHN PTWFWYSKAA LAKAGAAEPK TFDEFFAAMD KLKAAGLVPL
ALGGQGWQEH ITFYSVLLHS GGKDLYLKFY EGQDAATIAT PAFRKVLADF KRLKGYTDAG
SPNRNWNDAT AMVITGKAGF QIMGDWAKGE FVAAKQTAGK EFGCMAGFGP TSPYVIAGDV
FVFPKTSDAA AIAAQQKLAT VMTSPAAQVA FNNKKGSIPI RTDVDMAAMD VCAQAGVTAM
KNPARHIANP DALMSPDRVG AVQDVLSKFW NTNQSVDDAV KALQNAVKG