| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4321 |
|---|
| Symbol | |
|---|
| ID | 6161199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4834755 |
|---|
| End bp | 4835984 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641667098 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001793337 |
|---|
| Protein GI | 171060988 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.739189 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAC GCACCATCCG ACTGCTCACC GCGCTGCTCG CCGGCCTGGG CCTGGCCGGC
GCCGCCCAGG CGCAAAAAGC CGAAGTGATC CACTGGTGGA CGTCGGGTGG CGAATCGGCG
GCCATCAAGG AGTTCGCGGC GGCCTACAAC AAGGCCGGCG GCAACTGGGT CGACTCGGCG
GTGGCCGGTG GCGAAGCCGC GCGGGCCTCT GCGCTGAGCC GCATCGCCGG TGGCAACCCG
CCCGTGGCGG CGCAGTTCAA CACCTCCAAG CAGTACTTCG ACGTCATCGA CGAAGGCCTG
CTCAACAACA TCGACGCCGT GGCCATCAAG GAGGGCTGGG ACAAGCTGCT GCCCGCGCCG
GTGCTCAAGA TGGTGAAGGT CAAGGGCCAC TACTACGCCG CGCCGGTCAA CATCCACAAC
CCGACCTGGT TCTGGTATTC GAAGGCGGCC CTGGCCAAGG CCGGTGCGGC CGAGCCCAAG
ACCTTCGATG AATTCTTTGC CGCGATGGAC AAGCTGAAGG CCGCCGGCCT GGTGCCGCTG
GCGCTGGGCG GACAGGGCTG GCAGGAGCAC ATCACCTTCT ACTCGGTGCT GCTGCACTCG
GGTGGCAAGG ACCTGTACCT GAAGTTCTAC GAAGGCCAGG ATGCCGCCAC CATCGCGACC
CCGGCGTTTC GCAAGGTGCT GGCCGACTTC AAGCGCCTGA AGGGCTACAC CGACGCCGGC
TCGCCCAACC GCAACTGGAA CGACGCCACC GCGATGGTCA TCACCGGCAA GGCCGGCTTC
CAGATCATGG GCGACTGGGC CAAGGGCGAG TTCGTCGCCG CCAAGCAGAC GGCGGGCAAG
GAGTTCGGCT GCATGGCCGG CTTCGGCCCG ACGTCGCCCT ACGTGATTGC GGGCGACGTG
TTCGTCTTCC CCAAGACCAG CGATGCCGCG GCCATCGCCG CGCAGCAGAA GCTGGCCACG
GTGATGACCT CGCCGGCCGC GCAGGTGGCC TTCAACAACA AGAAGGGCTC GATCCCGATC
CGCACCGACG TCGACATGGC GGCGATGGAC GTCTGCGCCC AGGCCGGCGT GACCGCGATG
AAGAACCCGG CCCGCCACAT CGCCAACCCC GACGCGCTGA TGAGCCCGGA CAGGGTCGGC
GCGGTGCAGG ACGTGCTGTC GAAGTTCTGG AACACCAACC AGAGCGTGGA TGACGCCGTC
AAGGCGCTGC AGAACGCGGT CAAGGGCTGA
|
|---|
| Protein sequence | MTTRTIRLLT ALLAGLGLAG AAQAQKAEVI HWWTSGGESA AIKEFAAAYN KAGGNWVDSA
VAGGEAARAS ALSRIAGGNP PVAAQFNTSK QYFDVIDEGL LNNIDAVAIK EGWDKLLPAP
VLKMVKVKGH YYAAPVNIHN PTWFWYSKAA LAKAGAAEPK TFDEFFAAMD KLKAAGLVPL
ALGGQGWQEH ITFYSVLLHS GGKDLYLKFY EGQDAATIAT PAFRKVLADF KRLKGYTDAG
SPNRNWNDAT AMVITGKAGF QIMGDWAKGE FVAAKQTAGK EFGCMAGFGP TSPYVIAGDV
FVFPKTSDAA AIAAQQKLAT VMTSPAAQVA FNNKKGSIPI RTDVDMAAMD VCAQAGVTAM
KNPARHIANP DALMSPDRVG AVQDVLSKFW NTNQSVDDAV KALQNAVKG
|
|---|
| |