| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4267 |
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| Symbol | |
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| ID | 6162243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4774685 |
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| End bp | 4777066 |
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| Gene Length | 2382 bp |
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| Protein Length | 793 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641667044 |
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| Product | hypothetical protein |
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| Protein accession | YP_001793283 |
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| Protein GI | 171060934 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCGC TCGACCGCAA GCTGCTGCGC GACCTGCTGC GCATGTGGAG CCAGGCGCTG
ACGATCGCGC TGGTGGTGGC CAGCGGCATC GGCGGTTTCC TGACCACGTT GTCGGCGGTC
GATTCGCTGG CGCTGGCACG CGATCGCTTC TATGCCGAGG GCCGTTTTGC CGACGTGTTT
GCCGGCGTGA AACGCGCGCC GCTCGCGCTG GTCGATACCT TGCGCGATGT GCCCGGCGTG
GCCGATGTGC AGACCACCAC CGAGAAGACG GTGCGGGTCG AGATCGCCGG CTCGACCGAC
CCGATCGTCG GCCAGCTGAT CGGCATCGAC CGCGGCCAGC CGCTGCGCAT GAACCGCATC
ACGCTGCGCA GCGGCCACGC CGACGACGCC TCGATGTCAC CCGGCCGGGC GCTGCCCGAC
GGCGCGCTGC CGGCCTGGGT GTCGGAGTCG TTCGCGGTGG CGCATGGCTT GAAGCCCGGT
GCGCGGCTGT CGGCGTTGAT CAACGGCAAG CAGCGCGCGC TGGTGGTGGC CGGCGTGGCG
CTGTCGCCCG AGTACATCTT CGCCGGCCTG TGGGGCATGC CGGACACACG CGGCTTCGGC
GTCTTCTGGG TCGACCAGGA GGCGCTGGCC GCGGCCTACG ACATGGCCGG CGCGTTCAAC
CGCGTGGCCG TCAAGCTCGC GCCCGGCGCC GATGAACGCG CGGTGATCGA CGCGCTGCAA
CGCCGGCTCG CGCCCTACGG CGGGCGCCAG GCGAGCGGCC GCGCCGACCA GACCTCGCAC
GCCATGCTCG ACAACGAGAT CAAGGAGCAG CGCGTGCTCG GCAGCGTGCT GCCGTCGATC
TTTCTCGGCG TGGCCGCGTT CCTGCTCAAC GTGGTGGTGT CGCGGCTGGT GGCGACGCAG
CGCGAGCAGA TCGCCGCGCT GAAGGCGCTG GGCTACGCCA ACAGCGCCAT CGCCGCGCAT
TACCTGAAGA TGGTGCTGGC GATCGTGGCG GTGGGTTTCG TGCTCGGCAT CGGGCTGGGC
GACACGATGG GCACGATGCT GACGCGGCTG TACGCCGAGT TCTTCCGCTT CCCGAGTTTC
GAGCACCGCA TCGCGCCGGG GCTGCTGCTG GTGGCGCTGG CGCTGACGCT GGCCACCGCG
GTGCTGGGCA CGCTCAACGC CATCGCCGCC ACCGTGCGGC TGGCGCCGGC CGAGGCGATG
CGCCCGCCCG CACCCGGCCG CTACCGGCGC ACGCTGCTCG AAACCCTCGG CGTGAAAGGC
ATCCCGACGC CGCTGCGCAT GATCGTGCGC AACATGGAGC GCCGGCCGCT GCGCACGGGG
CTGTCGATCG GCGGCGTGGC CGCGGCGGTG GCGATCGTGA TCATGGGCAA CTTCTTCCGC
GATGCGATCG AGTTCATCGT CGACTCGCAG TTCAACCTCG GCATGCGCAG CGACGTGGCG
GTCTGGCTGC TCGAAGCCAC GCCCGATGCG GCCCGCCACG AGCTGGCGCG CGCACCGGGC
GTGACGATGA CCGAGTCGCT GCGCTTCGTG CCCGTCACGC TGGTCAACGG TCATCGGCGC
GAGCGTGTCG AGATCCGCGG CTACGGCGAC ACGCAGGAGC TTTACCGCGT GATCGACGTG
CGCAACCGCC AGACCCGGCT CGACGGCAAC GGCCTCGTGT TGACCGACCG GCTGGCCGCC
AAGCTCGGCG TGAAGGTGGG CCAGACGCTG CAGGTCGAGC CGCTCGAAGG CCGGCCGCGC
ACGCTGCACC TGAAGGTCGA CGCCACGGTG CAGGAGATGA TGGGCCTGAA CGCCTACATG
GGCCGCAGCG CGCTCAACCG CGCGCTCGGC GAGGGCGATC TGTCGTCGGG TTTCGTGCTC
GCCATCGAGC GCGGCCGCGA GGGCGAGCTG CTCGACGCCA CCCGTGCCAT GCCGCGCGTG
GCCGGTGCCT TCAGCAAGGC CACGATGCTG CGCAACATGC AGGAGATCAG CGCCCGCAAC
ATCCGCATCA TGAGCAGCGT GCTGACCTTC TTTGCCGCGG TGATCGCGGT CGGCGTGGTC
TACAACAACG CCCGCATCGC GCTGGCCGAG CGCACCTGGG AGCTGGCCAG CCTGCGCGTG
CTGGGCTTCA CGCGCGCCGA GGTGTCGGGG CTGCTGCTGG GCGAGATGGC GATCTCGATC
GGCATCGCGC TGCCGCTGGG CATGGCGCTC GGTTACGGGC TGGTGCACCT GATCGCCGGG
CTGCTGCAGA GCGACCAGTT CTTCTTTCCG GTGGTGATCC TGCCGCGCAC CTACGCGTGG
GCCGCCTTGT GCGTGATGGC CGCGGGCGTG GCCAGCGCGC TGGTGGTGCG CCGGCGCATC
GATCGGCTCG ACATGGTGGC CGCGCTCAAG ACGAGAGAGT GA
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| Protein sequence | MKALDRKLLR DLLRMWSQAL TIALVVASGI GGFLTTLSAV DSLALARDRF YAEGRFADVF
AGVKRAPLAL VDTLRDVPGV ADVQTTTEKT VRVEIAGSTD PIVGQLIGID RGQPLRMNRI
TLRSGHADDA SMSPGRALPD GALPAWVSES FAVAHGLKPG ARLSALINGK QRALVVAGVA
LSPEYIFAGL WGMPDTRGFG VFWVDQEALA AAYDMAGAFN RVAVKLAPGA DERAVIDALQ
RRLAPYGGRQ ASGRADQTSH AMLDNEIKEQ RVLGSVLPSI FLGVAAFLLN VVVSRLVATQ
REQIAALKAL GYANSAIAAH YLKMVLAIVA VGFVLGIGLG DTMGTMLTRL YAEFFRFPSF
EHRIAPGLLL VALALTLATA VLGTLNAIAA TVRLAPAEAM RPPAPGRYRR TLLETLGVKG
IPTPLRMIVR NMERRPLRTG LSIGGVAAAV AIVIMGNFFR DAIEFIVDSQ FNLGMRSDVA
VWLLEATPDA ARHELARAPG VTMTESLRFV PVTLVNGHRR ERVEIRGYGD TQELYRVIDV
RNRQTRLDGN GLVLTDRLAA KLGVKVGQTL QVEPLEGRPR TLHLKVDATV QEMMGLNAYM
GRSALNRALG EGDLSSGFVL AIERGREGEL LDATRAMPRV AGAFSKATML RNMQEISARN
IRIMSSVLTF FAAVIAVGVV YNNARIALAE RTWELASLRV LGFTRAEVSG LLLGEMAISI
GIALPLGMAL GYGLVHLIAG LLQSDQFFFP VVILPRTYAW AALCVMAAGV ASALVVRRRI
DRLDMVAALK TRE
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