| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4227 |
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| Symbol | |
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| ID | 6160687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4738229 |
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| End bp | 4738864 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641667004 |
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| Product | lipopolysaccharide transport periplasmic protein LptA |
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| Protein accession | YP_001793243 |
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| Protein GI | 171060894 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.289947 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACACAC AGTTTTCAGT CCTGTCCCCT GCCGCGTCTG ATGCGTCGTG CGTCGCCGCG
CGAGAGCCGG GCGTCGATCG GGCTGGCCGG CGCGGTGCGG CAGGCTGGGC GGTCGCCCTG
CTGTTGTCGG CGCTGGCCGT GACGGCCCAG GCCGAACGGG CCGACCGGGA TCTGCCGCTG
GAGTTCAATG CCGGCCAGCT CAAGATCGAC GGCAAGCGCA AGCTGCAGCT GCTGACCGGC
GGCGTCGAGA TCACCCGCGG CACGCTGATC CTGAAGGCCG ACCAGATCGA GTTGCGCGAG
ACGCCCGCCG GCCAGCTGGC GGTGGCATCG GGCAGCGAGG CGCAGCCCGC CACGTTCAGG
CAGAAGCGCG ACGGCCTCGA TGAAGTCATC GAGGGCCAGG CCCGGCGCAT CGAATACGAC
ACCGTCAGCC AGACCGTGCG ATTCAGCCAG CAGGCGCAGG TGCGTCTGCT GCGCGCCGGC
GTGCTGGCCG ACCAGATCAG CGGCCAGACC ATCGTCTACG ACCACGGCCG CGACGCGATC
GAGATCCAGG GTGGTGCGGC CGACGGCAGC AGCGGCGGGC GGGTGCGCGG CATCGTCACG
CCGCGCCCGG CCGACGCGGC GGGAGTCAAG CGTTGA
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| Protein sequence | MNTQFSVLSP AASDASCVAA REPGVDRAGR RGAAGWAVAL LLSALAVTAQ AERADRDLPL
EFNAGQLKID GKRKLQLLTG GVEITRGTLI LKADQIELRE TPAGQLAVAS GSEAQPATFR
QKRDGLDEVI EGQARRIEYD TVSQTVRFSQ QAQVRLLRAG VLADQISGQT IVYDHGRDAI
EIQGGAADGS SGGRVRGIVT PRPADAAGVK R
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