| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4219 |
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| Symbol | |
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| ID | 6163891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4729975 |
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| End bp | 4731087 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641666996 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001793235 |
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| Protein GI | 171060886 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0216896 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGCC CGACCCAACC CCGTCGCCGC TTCCTACGCA ATGCCTCGGC CACCGCCCTC
GGCGCCGGCG CACTGGCCGC GCCGATGATC GCGCAGGCGC AGACCACCAG CCTGCGCTTC
CAGAGCACCT GGCCGTCGAA GGACATCTTC CACGAGTACG CCACCGACTT CGCCAAGAAG
GTCAACGACA TGACCGGCGG CGAACTCAAG ATCGAGGTGC TGCCGGCGGG CTCGGTGGTG
CCGGCCTTCG GCCTGCTCGA CGCGGTCTCC AAGGGCACGC TCGACGGCGG CCACGGCGTG
CTGGGCTACA ACTACGGCAA GCAGAACGCG CTGGCGCTGT GGAACTCGGG CCCCGCGTTC
GGCATGGACG CCAACATGCT GCTGGCCTGG CACAAGTACG GCGGCGGCCA GGAGCTGCTG
GCCAAGCTCT ACGCCTCGAT CGGCGGCAAC GTGGTGTCCT TCCTGTACGG CCCGATGGCC
ACGCAGCCGC TGGGCTGGTT CAAGAAGCCG GTCACCAAGG TCGACGACTT CAAGGGCCTG
AAGTTCCGCA CCAACGGCCT GGCGATCGAC CTGTTCACCG CCATGGGCGC GGCGGTCAAC
GCGCTGCCCG GCGGCGAGAT CGTGCCGGCG ATGGACCGCG GCCTGCTCGA CGGCGCCGAG
TTCAACAACG CCACCTCCGA CCGCGTGCTC GGCTTCCCCG ACGTCTCCAA GGTCTGCATG
CTGCAGAGCT ACCACCAGAG CGCCGAGACC TTCGAGATCA CGTTCAACAA GACCAAGTAC
GACGGCCTGC CGGCGAAGAT GAAATCGATC ATCGCCTACG CGGTCGAGGC GGCCTCGGCC
GACATGTCCT GGAAGGCGAT CGATCGCTAT TCGAAGGACT ACGCCGAGCT GCAGAGCAAG
GACAAGGTCA AGTTCTACAA GACGCCCGAC GCGATCCTGC AGGCCCAGCT CAAGCTGTGG
GACGACATCA TCGCCAAGAA GTCGGCCGAG AACCCGCTGT TCAAGGAGAT CGCCGCGTCG
CAGAAGGCCT TCGCCGAGCG CGCGGTGAAG TGGGACCAGG ACACCTACGT CAGCCGTCGC
ATGGCGGTGG CGCACTTCTT CGGCAACAAG TAA
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| Protein sequence | MTSPTQPRRR FLRNASATAL GAGALAAPMI AQAQTTSLRF QSTWPSKDIF HEYATDFAKK
VNDMTGGELK IEVLPAGSVV PAFGLLDAVS KGTLDGGHGV LGYNYGKQNA LALWNSGPAF
GMDANMLLAW HKYGGGQELL AKLYASIGGN VVSFLYGPMA TQPLGWFKKP VTKVDDFKGL
KFRTNGLAID LFTAMGAAVN ALPGGEIVPA MDRGLLDGAE FNNATSDRVL GFPDVSKVCM
LQSYHQSAET FEITFNKTKY DGLPAKMKSI IAYAVEAASA DMSWKAIDRY SKDYAELQSK
DKVKFYKTPD AILQAQLKLW DDIIAKKSAE NPLFKEIAAS QKAFAERAVK WDQDTYVSRR
MAVAHFFGNK
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