Gene Lcho_4098 details

Gene Information

• Locus tag: Lcho_4098
• ID: 6159946
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4598436
• End bp: 4599083
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 641666876
• Product: LuxR family transcriptional regulator
• Protein accession: YP_001793115
• Protein GI: 171060766

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.00000000762213
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTACACCT CATCCGCACA CCCGGCGATC AGCCCCGCGA TCGGCACGCC GCTGACCCAC 
ATGCTGGCGC ACGCGCTGGG CGCCTTCGAC GAGATCGACT ACGGCATCGT CATCGTCGAC 
CGGCTGGCGC GCGTGCTCAA CGCCAACCAC ATGGCGCGCT GCCTGTGTGC CGAACGCGAC 
GGCGCCTGCC TGCTGCAGGC CGACCGGCTG ACCGCGCGCC AGTGCGGCGA CGACCACCTG 
CTGCAGCAGG CCGTGCAGAG CGCCGCCGGC CAGGGCCGGC GCAGCCTGCT CACGCTCGGC 
GCCGGCGAGC GCAGCCAGAC CGTGGCGGTG GTGCCGCTCG GCCAGGGCAC GGCGCCGGCG 
GTGCTGCTGG TGTTCGGCAA GCGCCAGGTA TGCGAGGCGC TCAGCGTCGA CCACTACGCC 
CGCGTCAACG GCCTGACGCA CGCCGAAAGC ATGGTGCTGG CCGCGCTGTG CGACGGCGAC 
AAGCCGCAGG AGATCGCCGA GCGCTTCGGC GTGGCGGTGT CGACCGTGCG CACCCAGATC 
GCCAGCATCC GCCAGAAGAC CCGCACCGAC AGCATCCGCG ACCTGGTGCG CCGCATCGCC 
GTGCTGCCGC CGATCGTCTC GGCGCTGGGC CGCGCCCAGG CTCATTGA 

 

Protein sequence

MYTSSAHPAI SPAIGTPLTH MLAHALGAFD EIDYGIVIVD RLARVLNANH MARCLCAERD 
GACLLQADRL TARQCGDDHL LQQAVQSAAG QGRRSLLTLG AGERSQTVAV VPLGQGTAPA 
VLLVFGKRQV CEALSVDHYA RVNGLTHAES MVLAALCDGD KPQEIAERFG VAVSTVRTQI 
ASIRQKTRTD SIRDLVRRIA VLPPIVSALG RAQAH