| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4096 |
|---|
| Symbol | |
|---|
| ID | 6159944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4595569 |
|---|
| End bp | 4597383 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641666874 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001793113 |
|---|
| Protein GI | 171060764 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000000005496 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGGCGCCG TGAAGCGCCT GCGCGTGGTG CCCAGCCTGG CCGAGCCGGA CGACGGCGCG
GCGGCCACCG AGCGGCGCGG CCCCGGGCGG CGCAGCGCCG AGGCCCGCAT CGACGCCGCC
GTGCGCCACG GCGGCTGGCT GATCGCCTGG CTGGCGCTGT GGCTGGCGCT CGTGACGGGG
CGGCTGCAGC CGCAGGGCGG GCGGGCGCTG GCCGGGCTGG CCGGCGTCGC CGTCGTGCTG
CTGCTGGTCT GGCTGGCGCT GACGCTGGCC TGGCTGGGCC TGCGCTGGCG GCTGCCGCGG
CGCTCTGCCG ACAAGCGGCC GTGGTGGCGG GCCTGGCAGG GCGTGGCCGG GCTGAACCTG
CTGCTGCCGG GGCTGCTGCC GTGGCTGTGG CCGTCGTTCG GGCAGGCCTT CGACCTGGCC
GCGTGGGCGG CGGTGCAGCT GATGCTGGTG GCCGGCTGCA TCGCCGCCTT GCCGATGCTG
CCGTGGCTCG GCCGGCTGGC CAGCCTCGGG CTGCTGTCGG GCGCCACGGC GATCGCGCTG
GCGGGCCCCG ACCGCCGGGT CGCCGCGGCC GGCGTGGCGC TGGCGGGCGC GGTCAGCCTG
TTCGGCTGGC TCGCCAGCGG CTCGGCCGGC CGGCGCTGGA TGCGCCGCAC CGCCGAGCTG
ATCGAGACCG GCGAGCGCCT GCGCCGGGTC AGCAGCGAAC GCGACGCGGC GCAGCGGGCC
GATGCCGACA AGCGCCGCTT CGTCGCCGCC GCCAGCCACG ACCTGCGCCA GCCGATGCAC
GCGCTGGGCC TGTTCGTGGC CACCCTCGAA CGCCACCTCA AGGGCACCGC CGACGAGGCG
CTGGTGCGCA ACATGATGCG ATCGATCGAG GCGCTGGATC GCTCGTTCGG CGCGCTGCTC
GACCTGTCGC GGCTGGAGGC CGGCGCGGTG CAGCCCAACG TGCAGCGCTT CCCGCTGCGC
GACGTGTTCC GCCGCCTGCA CATGCATTTC GCCGGCCAGG CCGAGGAGCT CGGCCTGGGC
CTGCGCTTCT CGGCCGGCGG CAAGGCGGTC AACAGCGACC CGCAGCTGCT CGAGCGCATC
CTCTCCAACC TGATCCAGAA CGCGCTGCGC TACACCCGCG AAGGTGGCGT GGTGGTGGTC
GCGCGCAGCG CCGCGCACCA GATCAGGCTC GAGGTCTGGG ACACCGGCCG CGGCATCTCG
GAGGCCGACC TGCCGCGGGT GTTCGACGAG TTCTACCGCG TGCCCGACAG CGCCCGCAGC
CACATCCAGG GCCTCGGCAT GGGGCTGGCG ATCGTCAAGC GGCTGGTCGC GCTGCTCGGC
CACACGCTCG AGGTCAGCTC GCAGCCGGGC CGCGGCACGA TGTTCCGCAT CGGCATCGCC
AGCGGGCCGA TGGCCGAGGT CGAGGACGCC ACCGCGGCGG CGGACACGCT GCCGGCGCCG
TTTGTCGAGG CGCGCTGCGT GCTGCTGGTC GACGACGAGG CGCCGATCCG CGAAGGCCTG
TGGATGCTGC TGACCGAATG GGGTTTCGAG CCGGTGGCGG TGGCCGACCT GGCCGGCGCC
GAAGCGGCCG CGCACGCGCT CGGCGACCGG CTCGACCTGG TGATCTCCGA CCTGCACCTG
CAGCACGGCG AAGACGGCCT CGACGTGATC GAGCGCGTGC GCCAGGTCTG CGGCCGCCAG
GTGGCGGCGA TCCTGGTCAC CGGCGACACC AGCCCGGCCG AGATCCGCCG CGCCTCGGCC
AGCGGCCACC GGGTGCTGTT CAAGCCGGTG CAGCCGAGCA AGCTGTTCAA CGTGCTGCGC
GCGCTGGTCG ACTGA
|
|---|
| Protein sequence | MGAVKRLRVV PSLAEPDDGA AATERRGPGR RSAEARIDAA VRHGGWLIAW LALWLALVTG
RLQPQGGRAL AGLAGVAVVL LLVWLALTLA WLGLRWRLPR RSADKRPWWR AWQGVAGLNL
LLPGLLPWLW PSFGQAFDLA AWAAVQLMLV AGCIAALPML PWLGRLASLG LLSGATAIAL
AGPDRRVAAA GVALAGAVSL FGWLASGSAG RRWMRRTAEL IETGERLRRV SSERDAAQRA
DADKRRFVAA ASHDLRQPMH ALGLFVATLE RHLKGTADEA LVRNMMRSIE ALDRSFGALL
DLSRLEAGAV QPNVQRFPLR DVFRRLHMHF AGQAEELGLG LRFSAGGKAV NSDPQLLERI
LSNLIQNALR YTREGGVVVV ARSAAHQIRL EVWDTGRGIS EADLPRVFDE FYRVPDSARS
HIQGLGMGLA IVKRLVALLG HTLEVSSQPG RGTMFRIGIA SGPMAEVEDA TAAADTLPAP
FVEARCVLLV DDEAPIREGL WMLLTEWGFE PVAVADLAGA EAAAHALGDR LDLVISDLHL
QHGEDGLDVI ERVRQVCGRQ VAAILVTGDT SPAEIRRASA SGHRVLFKPV QPSKLFNVLR
ALVD
|
|---|
| |