| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4095 |
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| Symbol | |
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| ID | 6159943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4593267 |
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| End bp | 4595456 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641666873 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001793112 |
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| Protein GI | 171060763 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00000000736734 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCGTCTG CCCCGTACCT CCGCCTGCTG CTCGTTGCCG CCTGTCTGTG CGCCGCGCCG
GGCTGGCTGC GGGCGGCCGA CGACGACAAC CTCGCCGCCC AGGCCCAGGC GCGCCGCCAG
GATGCCGAGT CGCTGCTGCA GCTCAGCGCC GAAGGCCGCG CGCTCTACGC GCGCGACACC
ATCCGGCTCG ACGGCTACGG CTACTGCGGC CAGGCCCTGG CGCTGGCCGA CCGCGGCGAG
CTGCGCCAGA GCATCCGCGC GGCCAGCAAG GCGCTCTACC TCGGCCAGGA GGGCAGCGAC
GACGACCTGC AGGCCCACGC CCAGCGCGAC CTGGCGATCG CCTACGGCTA CGCCGGCGTG
CTGGATCTGG CCGAGCGCCA CGCCCGCGAG GCGCTGGCCC TGCCGGTGCG CGACGCGTCG
CAGGTCCACG CGCCGGCCCA CAAGGTGCTG GGCGACGTGG CGGCGCGGCG CGGCCGGCCC
GACGAGGCCC AGGCCGCCTA CCGGCACGCG CTCGATCTGG CGAGTCCGCG CTACCGGCCG
TTCGTGCAGC TGTCGATGGC CAACGCCCAG ACCGCCGGCG GCCAGGCCGA CGCCGCCTTG
CAGACGCTGC AGGCGCTGCC ACCGGCCGCT CGCGCGCCGC TCGGCCCGTA CTACGAGCGC
AGCCTGGCGC AGGCCCTGCT CGCCACCGGC CAGGTCGACG CGGCGCTGCA GCAATGGCGC
CAGGTGATCG ATGCCGGCGG TGCCGGCCGC AGCGGCGATC GCGCCGATCG AGCGGATCTC
GCTGATCTCG ACTACCACCG CCTGTGGGCC TGGGAAGGCA GCGCCCGCGC CGAGCTGACC
CGCGGCCGCC CGGCCGAGGC GCTGGCGGCC TACCAGCAGG CGCTGCGGCT GGCCGATCCG
CTGCGGGCGC GCTTTCGCAG CGAGGAGTTC AAGTCCGGCC TGTTCAGCGA TCTGCAGGGG
GTCTTCGACG CGGCCCTGAA CCTGGCCGTG CAGCAGGGCG ACTGGGCCGG CGCGTGGCGC
ATCTCCGAGG CCTCGCGCGC TCGTGCGCTG CTCGACGCCG TGCGCCAGCA TGCCGACGAT
CGCCTGGCCC GGCCGGTGTC GCTCGACGAC CTGCAGGGCC GGCTGGCGCC TGACGAGGCG
GTGCTCGAAT TCCACGTGCT GCCGCAGCAG ACGCTGGTCT GGCTGATCCG CCGTGACGGC
CTGGTCGGCC TGGCCCTGCC GCTGCCGCAG GCGGCGCTGC AGGACGGCGT CGAGAAGCTG
CGCGCCAGCA TCATCGCGCG CCGCCCCGAC ACCCTGGCGC TGGCGCAGGC GCTGCACCGC
CAGCTGCTCG GCCCGCTCGA CCTGAGCGGC GTCACGCGGC TGCAGGTCGT GCCGCACGGC
GCCCTGCATT ACCTGCCGTT CCAGGTGCTG CACGATGGCC GCGGCTACCT GGTCGAGCGC
CTCGCGCTGG CCAGCTGGCC GTCGGCCGCG CTCGGTGCGC AGCTGGGCGC ACGGCGTGCC
GGCGTCGCCG GTGGCCTGGC GCTGCAGGCC TTCGGCAACC CGAGCACCGA CCGCAACGTG
CCGCTGCCCG GCGCCGAGCG CGAGGTGCAG GAGATCCGAC CGCTGTTCGC CCAGGGCCGC
ACCTTCCTGC AGCAGCAGGC CAGCCGCGCC CAGCTGCTGG CGCTGCTCGG CGGGCCGGGC
GCAGCGGGTG CCACCGCCAC CACGGCCGCG GCCGCCACGC CCGGTGTCTC GGCCAGCGTG
CTGCACGTGG CCGCACACGC CGAGGTCGAC GAGGTCGATC CGATGTACTC GCGCATCCTG
CTGGCCTCCA GCCCGCTCGA CGACGGCCTG CTCGAGGCGC GCGAGATCTA CCGCCTGGAC
CTCAGCCGCA CGCCGCTGGT CACGCTGTCG GCCTGCGAAA GCGCGCTCGG CCGCATCGCC
CGCGGCGACG AGATCCTGGG CTTCACGCGC TCCTTCCTGT CGGCCGGCGC CAGCACCGTG
ATCGCCTCGT TGTGGCCGGT GGCCGACGAC GCCACCCGCC AGCTGATGAC CCGCTTCTAC
CGCGATGCCA CACAAGGGTC GGACGCGATG CAGGCGCTGC GCAACGCCCA GCTCGAGGTG
ATGCGCAGCC GCGGCCTGGC GCATCCGTTC TTCTGGGCGC CGTTCAACGT CATCGGCGAC
GGTGCGCTGC GCCTGGGGGC GGCGCCATGA
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| Protein sequence | MPSAPYLRLL LVAACLCAAP GWLRAADDDN LAAQAQARRQ DAESLLQLSA EGRALYARDT
IRLDGYGYCG QALALADRGE LRQSIRAASK ALYLGQEGSD DDLQAHAQRD LAIAYGYAGV
LDLAERHARE ALALPVRDAS QVHAPAHKVL GDVAARRGRP DEAQAAYRHA LDLASPRYRP
FVQLSMANAQ TAGGQADAAL QTLQALPPAA RAPLGPYYER SLAQALLATG QVDAALQQWR
QVIDAGGAGR SGDRADRADL ADLDYHRLWA WEGSARAELT RGRPAEALAA YQQALRLADP
LRARFRSEEF KSGLFSDLQG VFDAALNLAV QQGDWAGAWR ISEASRARAL LDAVRQHADD
RLARPVSLDD LQGRLAPDEA VLEFHVLPQQ TLVWLIRRDG LVGLALPLPQ AALQDGVEKL
RASIIARRPD TLALAQALHR QLLGPLDLSG VTRLQVVPHG ALHYLPFQVL HDGRGYLVER
LALASWPSAA LGAQLGARRA GVAGGLALQA FGNPSTDRNV PLPGAEREVQ EIRPLFAQGR
TFLQQQASRA QLLALLGGPG AAGATATTAA AATPGVSASV LHVAAHAEVD EVDPMYSRIL
LASSPLDDGL LEAREIYRLD LSRTPLVTLS ACESALGRIA RGDEILGFTR SFLSAGASTV
IASLWPVADD ATRQLMTRFY RDATQGSDAM QALRNAQLEV MRSRGLAHPF FWAPFNVIGD
GALRLGAAP
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