| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4086 |
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| Symbol | |
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| ID | 6160208 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4581857 |
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| End bp | 4583773 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641666864 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001793103 |
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| Protein GI | 171060754 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0000000236966 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCGCG GCCTCGATCC CGGCCTGCTG CGCCACTACA ACGAGGAGCT CGCCTACCTG
CGCGAGATGG GGCTGGAGTT CTCGCGCCAG TTCCCGAAGA TCGCCGCCCG GCTCGGCATG
GACGGGCTCG AGGTGGCCGA CCCCTACGTC GAACGCCTGC TCGAAGGTTT CGCCTTCATG
AGCGCGCGGG TGCAGTTGAA GCTCGACGCC GAGTACCCGC GCTTCATCGG CCACCTGCTC
GAAAGCGTCT ATCCGAACGC GCTGGCGCCG GTGCCGTCGA TGGCGGTGAT GCGGCTGCAG
CCCGATCTGG CCGACCCGGC GCTGGCTCGC GGCGCGCCGG TGCCACGGGG CAGCGCGCTG
CATGCCGATC AGCTGCGCAG CCAGAACACG CGCTGCGAGT TCCGCACCGC GCATGCGCTG
CGGCTGTGGC CGATCGAGAT CGCATCGGTG CAGTACTTCA GCCACGCCGG CGAGCTGCCG
GTGGCGCGCC TGCCCGAGCT GCGGCAGGCG GCCGGCGGCC TGCGCATCCG CCTGCGGGCG
CACGGCGGGC TGCGCTTCGA CCAGCTGCCG ATCGACTCGC TGGTGTTCTA CCTGGCCGCG
CCCGACGAGG TCGCGTACCG GCTGCACGCG CTGATTTTCG GTGCCGGGCT GGGCAGCTGG
CTGGCTGCGC CGGCCGCCAA CGCCCCGGTC CCTGGCAGCG CCGCGCGCCC GGTCGACCCC
GGCCCGGCCG GCGCCGGGTG GCGCGGCGCC GATTCGCTGC AGCCCCTCGG TCATTCGGAT
GACGAGGCGC TGCTGCCCGT CACCGCGCGC GGCTTCTCCG GCCACCGGCT GGTGCAGGAG
CTGGCCGCGC TGCCGCAGCG GTTCCTGTTC GTCGAGGTGG CCGAGCTGCG CGCGCGGCTG
GCCCGGCTGG CGGTCACCGA GGTCGACCTG TTCCTGCCCT TCAGCCGCGG CGAACCGGGC
CTGGAGGCGC TGGTCGACGC CAGCAGCCTG GCGCTCAACT GCACGCCGGC GATCAACCTG
TTCGGCAAGC GCCTCGACCG CATCCAGACC AGCGTGTCGA ACTGGGAATA CCACGTCGTG
CCCGACCGCA CACGCCCGCT CGACTACGAG CTGCACAGCC TGGCGAGCGT CGTCGGCCAC
GGCACCGGCC GGGTCGCCGA GCAGGCCTTC GCGCCGCTCT ACACCGCCTG CCACGACGAG
GGCCCGGAGC AGCTCGCCTA CTACAGCCTG CGCCGCGAGG TGCGCCTGCC GTCGACGCGC
CAGCAGGAGC AGGGTGCGCG CTCGTCCTAC CTCGGCAGCG AGGTGTTCGT GTCGCTGGTC
GACCCGCACA ACCTGCCGTA TGCCGAAGAT GTGCGCCAGC TCTCGCTCAC CGGTCTGGTC
AGCAACCGCG ACCTGCCGAT GCTGCTGTCG GGCAGCGGCT GGACGCTCGA CCTGCCCGGC
CCCGTGCGCG GCGCCACCTG CCTGCGCGGG CCGACCGCAC CGCACGCCCG CCTGCCACGC
GGCGACATCG GCTGGCAGCT CATCAGCCAG CTCACGCTCA ATCACCTGAG CATCGCGGGC
GAGGATCCGC AACGCGCCGC CGCATCGCTG CGCAGCCTGC TGATCCACCA CGGCTCGGCC
GACGACGCCG GCTGGCGCAA GCAGGTCGAG GGCCTGCGCG CGGTCTCGGC GCAGCCGGTG
ACGCGGCGCC TGCCGATGCC CGGGCCGCTG GCCTACGGGC TGGGCGTGGC GATCGACGTG
ACGGTCGACG AGCTCGCCTT CCAGGGCGGC AGCGCCTTCC TGATGGGCTG CGTGCTGGAG
CGTTTCCTGG CCCGCCAGGC GTCGATCAAC AGCTTCACGC AATTGCGGCT GATCGCGCCC
GGGCGCGGCA CGCTGATGAC CTGGCCGCCG CGCGTGGGCA GCGCCGCGGT GATCTGA
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| Protein sequence | MSRGLDPGLL RHYNEELAYL REMGLEFSRQ FPKIAARLGM DGLEVADPYV ERLLEGFAFM
SARVQLKLDA EYPRFIGHLL ESVYPNALAP VPSMAVMRLQ PDLADPALAR GAPVPRGSAL
HADQLRSQNT RCEFRTAHAL RLWPIEIASV QYFSHAGELP VARLPELRQA AGGLRIRLRA
HGGLRFDQLP IDSLVFYLAA PDEVAYRLHA LIFGAGLGSW LAAPAANAPV PGSAARPVDP
GPAGAGWRGA DSLQPLGHSD DEALLPVTAR GFSGHRLVQE LAALPQRFLF VEVAELRARL
ARLAVTEVDL FLPFSRGEPG LEALVDASSL ALNCTPAINL FGKRLDRIQT SVSNWEYHVV
PDRTRPLDYE LHSLASVVGH GTGRVAEQAF APLYTACHDE GPEQLAYYSL RREVRLPSTR
QQEQGARSSY LGSEVFVSLV DPHNLPYAED VRQLSLTGLV SNRDLPMLLS GSGWTLDLPG
PVRGATCLRG PTAPHARLPR GDIGWQLISQ LTLNHLSIAG EDPQRAAASL RSLLIHHGSA
DDAGWRKQVE GLRAVSAQPV TRRLPMPGPL AYGLGVAIDV TVDELAFQGG SAFLMGCVLE
RFLARQASIN SFTQLRLIAP GRGTLMTWPP RVGSAAVI
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