| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4081 |
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| Symbol | |
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| ID | 6161752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4574388 |
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| End bp | 4575758 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666859 |
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| Product | methyltransferase type 12 |
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| Protein accession | YP_001793098 |
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| Protein GI | 171060749 |
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| COG category | [N] Cell motility
[R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG4976] Predicted methyltransferase (contains TPR repeat) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0000000110716 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGCAG CTTCAACCGC AGTTCCGACG GCCACGCAGC CGCCGGACAC CCCCACCGAG
CTCAGCCTCA CCGACGCCCT GCGCATGGCC ATCGAGATGC AGCGCGAGCG GCTCTTCGAC
GGTGCCGAGA CGCTCTACCG GCGCGTGCTC GCGGTGGTGC CCGAGCAGCC CGATGCGCTG
CATTTCCTCG GCATGCTGCT GCATCAGCGT GGCCGCAGCG ACGAGGGCAT CGCGCACATC
GAGCGGGCGC TGGCGGCCGA GCCGGCGTAT GTCGGCGCGT ACAACAACCT CGGCAACATC
CACGCCTCGC GCGGCGAGAT CGGCAATGCG CTGCTGGCCT ATCAGCGCGC GCTGGCGCTG
ACGCCCGCCG ACAGCGCCGA GGCTGCCGAC CTGCACAACA ACCTCGGCGC GCTGCACAAG
GTGCAGCGGC GCTGGGCCGC CGCGCAGTCG CACTACGAAC AGGCGCTGGC GATCGACCCG
CGCCACGTCA ACGCGCACAA CAACCTTGGC CTGCTGCATG CTGCGCGGGG CGATCTGGCG
TCGGCGATCC GCTGCTATTG CCAGGCGATC GAGCTGATGC CGGGCAACTC GGAGGGCCGC
AAGCTGCTGG GCATCACCTA CTACACGGTC GGCAAGATCG CCGAGGCGGC CGAGGTGTTC
CGCCAGTGGC TGGCCGACGA GCCGGATCAT CCGGTGGCGC GCCACATGTA CGCGTCCTGC
TCGGGCATCC ACACGCCCGA GCGGGCGGCC GACAACTACG TCGAATACAC CTTCGACCGC
TTCGCCGCGA GCTTCGAGCA GCAGCTCAAC GAGCGGCTCA ACTACCAGGC GCCGCAGCTG
TGCGCCGCGC TGCTGCAGCG CCGCCTGCCG CCACCCGCGG CCGAGCTGGT GGTGCTCGAC
GCCGGTTGCG GCACCGGCCT GTGCGGGCCG CTGGTGGCGC CCTGGGCGCG CACGCTGGCC
GGTGTCGACC TGTCGCGCGG CATGCTCGAT CAGGCGCAGA CCAAGGGCGT CTACCAGGAC
CTCTACAAGG CCGAGCTGAC CGAGTTCCTG CGCCTGTCGC CCGATCAATG GGACGTGATC
CTGTCGGCCG ACACGCTGTG CTATTTCGGC GATCTGCACG AGGTGATCGG TGCGGCGGGC
CGGTCGCTGC GGCCGGGTGG CACGCTGGTC TTCACGGTCG AGGCGCTACC CGATGCGCTC
GACCGGCCGT TCCGGCTCGA ACCGCATGGC CGCTATGCGC ATGCCAGCGG CCATCTGCGT
GCGGTGGTCG AGCAGGCGGG CCTCGGGCTG CTCGATCTCG ATGCCGTGGT GCTGCGCGAG
GAAGGAGGCC AGCCGGTGCA CGGCTGGCTG GTGGCGGCGC GGCGGGGTTG A
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| Protein sequence | MTAASTAVPT ATQPPDTPTE LSLTDALRMA IEMQRERLFD GAETLYRRVL AVVPEQPDAL
HFLGMLLHQR GRSDEGIAHI ERALAAEPAY VGAYNNLGNI HASRGEIGNA LLAYQRALAL
TPADSAEAAD LHNNLGALHK VQRRWAAAQS HYEQALAIDP RHVNAHNNLG LLHAARGDLA
SAIRCYCQAI ELMPGNSEGR KLLGITYYTV GKIAEAAEVF RQWLADEPDH PVARHMYASC
SGIHTPERAA DNYVEYTFDR FAASFEQQLN ERLNYQAPQL CAALLQRRLP PPAAELVVLD
AGCGTGLCGP LVAPWARTLA GVDLSRGMLD QAQTKGVYQD LYKAELTEFL RLSPDQWDVI
LSADTLCYFG DLHEVIGAAG RSLRPGGTLV FTVEALPDAL DRPFRLEPHG RYAHASGHLR
AVVEQAGLGL LDLDAVVLRE EGGQPVHGWL VAARRG
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