Gene Lcho_4015 details

Gene Information

• Locus tag: Lcho_4015
• ID: 6163426
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4498584
• End bp: 4499075
• Gene Length: 492 bp
• Protein Length: 163 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641666795
• Product: NUDIX hydrolase
• Protein accession: YP_001793034
• Protein GI: 171060685
• COG category: [L] Replication, recombination and repair; [R] General function prediction only
• COG ID: [COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.00000561567
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCTGGCAG GCATGACCGA CAGCCCCCGC CCGCCCAAGA TTCCCGAGTC CGTGCTGGTC 
GTGATCCACA GCCCGGCGCT CGACGTGCTG CTGATCGAGC GGGCCGACAA GCCCGGTTTC 
TGGCAGAGCG TGACCGGCTC GAAGGACCAC CTCGACGAGC CTGCCGCGAT GACCGCCCGG 
CGCGAGGTCG CCGAGGAAAC CGGCATCGTG ATCGGCAGCG CCGCCGTGCC CGACGACGCG 
CTGGTCGACT GGGCCCTGCG CAACGTCTAC GAGATCTACC CGGTCTGGCG CCACCGTTAC 
GCGCCGGGCG TGACGCACAA CACCGAACAC GTCTTCGGCC TGACGGTGCC GCGTGACACC 
CCGGTGGTGC TGGCCCCGCG CGAGCATCTG CAGCATGTCT GGCTGCCGTG GCGCGAGGCG 
GCCGACCGCT GTTTTTCGCC GAGCAACGCC GAAGCCATCC TGCAACTGCC GCGTCTGAGG 
AAAGCGCCAT GA 

 

Protein sequence

MLAGMTDSPR PPKIPESVLV VIHSPALDVL LIERADKPGF WQSVTGSKDH LDEPAAMTAR 
REVAEETGIV IGSAAVPDDA LVDWALRNVY EIYPVWRHRY APGVTHNTEH VFGLTVPRDT 
PVVLAPREHL QHVWLPWREA ADRCFSPSNA EAILQLPRLR KAP