Gene Lcho_4005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4005 
Symbol 
ID6160516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4488468 
End bp4489028 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content70% 
IMG OID641666785 
ProductLemA family protein 
Protein accessionYP_001793024 
Protein GI171060675 
COG category[S] Function unknown 
COG ID[COG1704] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0000000752628 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGCCATCGC GTCTCGTGCT GATCGTCCTG GCGACGATCC TGGGTCTGTG GACACTCGGC 
GCCTACAACC GCCTGGTGCG CCTGCGCAAC AGCATGCGCA CGGCGTTTGC GCCGCTGGCC 
AGCCAGCTGC GGCAGCGCCA TGCCGTGGCG TTGACGCTGG CCGAGGTCTC GCGCACCCGC 
ATCACCGAGC CGCAGGATGA AGCGCTGATC GAAGCCACGC TGACGTCCGC CAGCCAGGCC 
GGTCGCGCCA GCGACAACGT CCAGCAGCGC CCCCTGCGCG GCGACGTGCT GCAGCAGCTG 
GCGATTGCCG AGGAGGTGCT GGTGGCCGCG CTCGACGAGC TCGGCCACGC CCTGCAGGAC 
CTCACGTCCG GCATCGGCCC CGACCCGGTC GTCAGCGACC TGCTGCGCCA GCGTGATGCG 
CTGCAGGAGC AGATCGCCTT TTCGCGGCTG GTCTACAACC AGTCGGCCGA CGAATACAAC 
CGCGCGGTGG CCCTGTTTCC GACCACGCTG GTGGCCGGCC TGTTCGGCTT CCATGCCGCG 
CCCGAGTTCC CGCCGATCTG A
 
Protein sequence
MPSRLVLIVL ATILGLWTLG AYNRLVRLRN SMRTAFAPLA SQLRQRHAVA LTLAEVSRTR 
ITEPQDEALI EATLTSASQA GRASDNVQQR PLRGDVLQQL AIAEEVLVAA LDELGHALQD 
LTSGIGPDPV VSDLLRQRDA LQEQIAFSRL VYNQSADEYN RAVALFPTTL VAGLFGFHAA 
PEFPPI