Gene Lcho_3980 details

Gene Information

• Locus tag: Lcho_3980
• ID: 6161502
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4466435
• End bp: 4468552
• Gene Length: 2118 bp
• Protein Length: 705 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641666758
• Product: ribonuclease II
• Protein accession: YP_001792999
• Protein GI: 171060650
• COG category: [K] Transcription
• COG ID: [COG0557] Exoribonuclease R

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 0.000301096
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGCCCAGA ACCCTCCACA GCACTCAGCC CAGCATTTCG CCCTGTTTGA CGAAGCCGGC 
AAATTCCTCG CCGGCCGTGT CCTGTCCGAA GCCGAAAGCT CGCTGCAGAT CGAGCTCGAC 
TCGGGCAAGC GGGCCAAGGT CAAGGCCGTC AACGTGATGC TGCGCTTCGA CAAGCCCGCG 
CCGGCCGAGC TGATCGCCGA AGGCCAGCGC CTGGCCGAGC AGATCGACCT CGACCTGGCC 
TGGGAATTCG CGCCCGAAGA GGATTTCGGC TTCGCCGATT TCGCGCGCGA CTATTTCAAC 
GCCAGCGCCG GCGTGACGCA GCAGGCCGCG GCGCTGTTTC GCCTGCACGG CGCGCCGCAC 
TACTTCCGCC GCGCCGGCAA GGGCCAGTTC CGCAAGGCGC CCGAAGAGAT CGTCAAAGCC 
GCGCTGCTGG GCATCGAGCG CAAGGCCCAG CAGGCCGCGC AGATCGAGGG CTGGGTCGGC 
GAGCTGGTGG CCAGGACCTG CCCGCAGCCG GTGCGCGAGC AGCTCTACAA GATCCTCTTC 
AAGCCCGACA AGAACGCGCC CGAATACAAG GCGGTGGTCG ACGCCGCCCG CCGCGCCCAG 
CGCGCGCCGC TCGACCTGCT GCTCGACGCC GGCGCGATCG ACAGCCCCTA CCAGTTCCAC 
TGGCGGCGCT TCCTGTTCGA CCAGTTCCCC AAGGGCACGA ACTTCCCCGC CGGCCTGGCT 
GCGCCGGCCA TCAAGGACGA GCTGCCGCTG GCGCCGGTGC GGGCGTTTTC GGTCGACGAC 
TCGTCGACCA CCGAGATCGA CGACGCGCTG TCGGTGCAGG GCCTGGGCAG CGGCACGGTG 
ATCTTCGGCG TGCACATCGC CGCGCCCGCG CTGGCGGTTC AGCCCGACTC GGCCGTCGAC 
AAGGTGGCGC GCGACCGTTT CTCGACCGTC TACATGCCGG GCTGGAAGCT GACCATGCTG 
CCCGACGAGG TGGTGCAGTC GTACACGCTG ATGGAAGGCC GCGATTGCCC GGCCGTGTCG 
CTGTACGTCA CCTTCGACGA GGCCACGCTG GAGGTGCGCG GCAGCGAGAC CAAGATCGAG 
CGCGTGCCGA TCGCCGCCAA CCTGCGCCAC GACCAGCTCG ACGCCGTCGT CACCGAAGCC 
GCGCTGACCG GTGCGGCGCC GGCCGAGTTC GCCTTCGCGC CCGAGCTGAG CTTCGCCTTC 
CGGCTGGCCC GTCACCTGAA GGCCGGGCGC GAGGTGGTGC GCGGCAAGCC GGAGAACTTC 
AACCGGCCGG ACTACAACTT CAAGCTGGTC GACGCCGAGG GGCTGTCGAT CGCCGAGCTG 
CCGGCCGGCC ATGAAAAGAT CGTGATCAGC GAACGCCGCC GCGGCGCGCC GCTCGACACC 
ATCGTCGCCG AGGCCATGAT CCTGGCCAAC AACACCTGGG GCGGCTGGCT GGCCGAGCTG 
GGCGTGCCGG GCATCTACCG CAGCCAGGCC AGCATGGCGC CGGGCATCAA GGTGCGCATG 
CAGACCCGGC CCGCGCCACA CGCCGGCATG GGCGTGGCGC ACTACACCTG GGCCACCTCG 
CCGCTGCGCC GCTACGTCGA CCTGGTCAAC CAATGGCAGA TCATCGCCTG CGCCCGCCAC 
GGCCGCACCG CCGCGCTGGT GGCGCCGTTC AAGCCCAAGG ACACCGCGCT GCTGGCGATC 
ATCAGCGGCT TCGACGCCGC CTACTCGGCC TACAACGGCT TCCAGAACGG CATCGAGCGC 
TACTGGACGC TGCGCTGGCT GGAGCAGAAC GACGTCACCG AGATCGACTG CTCGGTGATG 
AAGGACGGCC TGGTGCGCGC CGACAGCCTG CCGCTGGTGC TGCGCGCCAT CGGCGCCGAG 
CAGATGCCGC GCGGCGCGCA TGTGCGCGTG CGGCTGGGCC GCCCCGACCT GCTGACGCTC 
GACATCGGGG GCAGCGTCTC GACCCGCCTG GATGATGCGG CCTGCGCCGA AGCCGTGCCC 
GAGGACGAAG GCGACGACGC CGCCGAGGCC GCGCCGCTGG CGCTGGCGAT CGACCTGGGG 
GACGCGGATG CAGGCGCCGA TCCGGGAGCC GACGCCGGCA CCACGGCCGG CGCCGACAGC 
GTGCCCGCCC AAGGCTGA 

 

Protein sequence

MAQNPPQHSA QHFALFDEAG KFLAGRVLSE AESSLQIELD SGKRAKVKAV NVMLRFDKPA 
PAELIAEGQR LAEQIDLDLA WEFAPEEDFG FADFARDYFN ASAGVTQQAA ALFRLHGAPH 
YFRRAGKGQF RKAPEEIVKA ALLGIERKAQ QAAQIEGWVG ELVARTCPQP VREQLYKILF 
KPDKNAPEYK AVVDAARRAQ RAPLDLLLDA GAIDSPYQFH WRRFLFDQFP KGTNFPAGLA 
APAIKDELPL APVRAFSVDD SSTTEIDDAL SVQGLGSGTV IFGVHIAAPA LAVQPDSAVD 
KVARDRFSTV YMPGWKLTML PDEVVQSYTL MEGRDCPAVS LYVTFDEATL EVRGSETKIE 
RVPIAANLRH DQLDAVVTEA ALTGAAPAEF AFAPELSFAF RLARHLKAGR EVVRGKPENF 
NRPDYNFKLV DAEGLSIAEL PAGHEKIVIS ERRRGAPLDT IVAEAMILAN NTWGGWLAEL 
GVPGIYRSQA SMAPGIKVRM QTRPAPHAGM GVAHYTWATS PLRRYVDLVN QWQIIACARH 
GRTAALVAPF KPKDTALLAI ISGFDAAYSA YNGFQNGIER YWTLRWLEQN DVTEIDCSVM 
KDGLVRADSL PLVLRAIGAE QMPRGAHVRV RLGRPDLLTL DIGGSVSTRL DDAACAEAVP 
EDEGDDAAEA APLALAIDLG DADAGADPGA DAGTTAGADS VPAQG