| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3973 |
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| Symbol | |
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| ID | 6161960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4459178 |
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| End bp | 4460110 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641666751 |
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| Product | phosphomethylpyrimidine kinase type-1 |
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| Protein accession | YP_001792992 |
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| Protein GI | 171060643 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase |
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| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00627703 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACCCAA CCGCCACCGA CACCCCCACC GAGTCACCCG AAGACCTCGC GCCCGGCCCC
GTCTGCGTGA TGTGCTTCAA CGCCAGTGAC ACCACCGGTG CCGGCGGCGT GCCTGGCGAC
GTGGCCACGG TCGCCGCCAT GGGCGGCCAC GCCGTGCCGG TGATCACCAC GATCGTGATG
CGCGACACCG CCGAGGTGTT CGACCAGAGC CCGATCGACC CCGACACGGT GGTCGAGCAG
GCCCGCAGCG TGCTCGAAGA CCTCACCATC TCGGCCTGGA AGGTCGGCTT CCTCGGCACC
GCCGAAACCG TCGGCGCGGT CGCCGAGGTG CTGACCGACT ACCCCGACGT GCCGCTGGTC
ACCTATGTGC CCAACCTGTC GTGGATCGAC GACGAGGACG CCGCACAGTC CTACCACGAT
GCCCTGCGCG AGCTGGTCCT GCCGCAGACC GAAGTGCTGG TCGGCACGCA GAAGACGCTG
ACCGATTTCC TGCTGCCCGA GTGGGACGCC GAGCGCCCGC CGTCGGCGCG CGAACTGGCG
GTGGCGGCGG CCGAACACGG CACCAGCTAC GTGCTCGTCA CCGGCGTGCA GCTGCCCAAC
AACTTCATCG ACAACGTGCT GGCCTCGCCG CAAGGCGCCA TCACCGGCGA AAAGTACGAG
CGCTTCGACG CCGCCTTCGT GGGCGCGGGC GACACCCTGT CGGCCGCGCT GGCCACGCTG
CTGGCGTCCG GCCAGGAGCT GCACATCGCC GTCTCCGAAG GCCTGGCCTT CCTCGACCAG
GCGCTCGACG CGGGCTTCCG GCCCGGCATG GGCAACGTCA TCCCCGACCG TTTCTTCTGG
GCCGTGCCGC CCGATGAAGA AGACGAAGAA GCGCTCGATG GCGAAGACAC CCCCGACGCC
AACAGCCCGC CGACCTCCCG CAACATCCAC TGA
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| Protein sequence | MNPTATDTPT ESPEDLAPGP VCVMCFNASD TTGAGGVPGD VATVAAMGGH AVPVITTIVM
RDTAEVFDQS PIDPDTVVEQ ARSVLEDLTI SAWKVGFLGT AETVGAVAEV LTDYPDVPLV
TYVPNLSWID DEDAAQSYHD ALRELVLPQT EVLVGTQKTL TDFLLPEWDA ERPPSARELA
VAAAEHGTSY VLVTGVQLPN NFIDNVLASP QGAITGEKYE RFDAAFVGAG DTLSAALATL
LASGQELHIA VSEGLAFLDQ ALDAGFRPGM GNVIPDRFFW AVPPDEEDEE ALDGEDTPDA
NSPPTSRNIH
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