| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3966 |
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| Symbol | |
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| ID | 6162377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4446626 |
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| End bp | 4447663 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641666744 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001792985 |
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| Protein GI | 171060636 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000335389 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTCCACGG CACTGGAGCA CATGGTCGAG CTGACCCGCT CGCGTGATCG CGAACTGGTC
GACGCCTCGC TGCTCACCGC CTTGCTCGAC CTGCTGCCGA GCACGCGGCG GGTCCTGCTC
TGGCGCGTGC TGGGCGAGCC CGGCCAGCCG CAGCAGTGGC TGCATTGCGG CCGGCAGGAT
CGGGGCGATC TGGTGCCGGC CACCGAATTG CAGCTGGGCG ACCAGGGTGA GCCGCCCGCG
TTCGCGACGA TGCCGGCCCA TGCGCGCTGT TTCGCTTCGG TGCAGATGCT CACCGAGCCG
CTGCCCGACG GGGTTCAGGT GCTGGTGCCG ATGGCGAGCG AACGCGAGGT CGAGGGCGTG
GTCGAGCTGT GGCTCGATGC CCCGCTCGAT GCGCAGGGCG AACGCCTGGC GCGCAGCGTG
CTCAAGATCC ACCGCAACTT CCTCAGCCTG CTCGAATACA GCGAGCGCGA CACGCTGACC
GGCCTGCTCA ACCGCAAGAG CTTCGACGAG ACCTTCCTCA AGGCCACCGT GCTCGAGGCC
GAGCGGCTGT TCACCAGCGA CGCCGATCCG CGCCGCCACG CCGGCCTGCG CCATCACTTT
CTCGGTGTCA TCGACATCGA CCACTTCAAG CGCGTCAACG ATGACTACGG CCACCTGATC
GGCGACGAGG TGCTGGTGCT GGTGGCGCGC ATCATGCGCA GCACCTTCCG CTACGACGAC
CGGCTCTACC GCTTCGGCGG CGAGGAGTTC GTCGTGCTGC TGACGGCGCC CGACGACGAG
GCTGCCGGCG CCGCCTTCGA GCGCCTGCGC CTGAACCTCG AGAACTTCGT CTTCCCGCGC
GCCGGGCGGG TGACCATCAG CACCGGCTAC AGCGACGTGC GCCCCGGCGA CACGCCGCAA
GCCGCGTTCG ACCGGGCCGA CAAGGCGGTC TACCACGGCA AGGAAAACGG CCGCAACCAG
GTCTGCTCAT ACCGCGAGCT GGTGGCCGCG GGCCTGCTGA GCGAGAGCAG CGACAGCAGC
GACGTCGAGC TGTTCTGA
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| Protein sequence | MSTALEHMVE LTRSRDRELV DASLLTALLD LLPSTRRVLL WRVLGEPGQP QQWLHCGRQD
RGDLVPATEL QLGDQGEPPA FATMPAHARC FASVQMLTEP LPDGVQVLVP MASEREVEGV
VELWLDAPLD AQGERLARSV LKIHRNFLSL LEYSERDTLT GLLNRKSFDE TFLKATVLEA
ERLFTSDADP RRHAGLRHHF LGVIDIDHFK RVNDDYGHLI GDEVLVLVAR IMRSTFRYDD
RLYRFGGEEF VVLLTAPDDE AAGAAFERLR LNLENFVFPR AGRVTISTGY SDVRPGDTPQ
AAFDRADKAV YHGKENGRNQ VCSYRELVAA GLLSESSDSS DVELF
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