Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3963 |
Symbol | |
ID | 6162388 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4440691 |
End bp | 4442226 |
Gene Length | 1536 bp |
Protein Length | 511 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641666741 |
Product | deoxyribodipyrimidine photo-lyase |
Protein accession | YP_001792982 |
Protein GI | 171060633 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.000556996 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCAGCCT CCTTTTCTCC CCTCGCACCG TCCGCTCCCG CCGCTGCGGC TCACCCGCAT CGCCAACCGG CCGTGATCGA CACGCCGGTC GACGCCGCGC TGGTCTGGCT GCGCCGCGAC CTGCGGCTCG ACGACCACGC CGCGCTGCAT CACGCGCTGC GCAGCGCGAA GAAGGTCTGG TGCGCCTTCA TCTTCGACAC CACGATCCTC GATGCGCTGC CACGCGCGGA TCGGCGGGTC GAGTTCATCC ACCACGGCAT CGTCGAGCTC GACGGCCTGC TGCGCGCCCA CGGCAGCGGC CTGATCGTGC GTCACGGCGA CCCGCTGCAG GAGATCCCGG CGATCGCCGG CGCCCTGGGC GTGCAGGCGG TGCACATCAA CCGCGACTAC GAACCCGCCG CCGTGGCGCG CGACGCCCAG GTGCGCGGCG CGCTGGCGCA CGCGGGCATC GCGCTGCACA GCCACAAGGA CCAGGTGATC TTCGAGACCG ACGAGATCCT GACGATGGCC GGCTCGCCCT TCAGCGTCTT CACGCCCTAC AAGAACGCCT GGCTGAAGAA GCTCGACGGC TACTACCTGC GCGCCTACCC GGTGCAGCGC CACATCGGCG CGCTGGCGCC GGTGCCGGCG GCGCTGGACC GCGGCGTGCC GACGCTCAAC GACCTCGATT TCCTGCCGAC CGACATGGCC GCCCGGCTGC ATCCGGGCGC CTCGGGCGGC GCGACGCTGC TGCTCGACTT CCTGGAGCGC ATCGACCGCT ATGCCGACAC GCGCGACTTC CCGGCGATCA AGGGGCCGAG CTACCTGAGC GTGCACCTGC GTTTCGGCAC CGTCTCGATC CGCCAGCTGG CGCGGCTGGC ACACGAGCGC ATGGTGGGCG GCTCGCGTGG CGCCGAGGTC TGGCTGTCGG AGCTGATCTG GCGCGACTTC TATCACCAGA TCCTGCACCA CCACCCGCGC GTGGTGACGC ACTGCTACAA GCCCGAATAC GAAGCGCTGC GCTGGGAACA CGGCAAGCAC GCCGAGCAGC TGTTCGCCGC CTGGTGCGAG GGCCGCACCG GCTATCCGAT CATCGACGCG GCGATGCTGC AGCTCAACCG GACCGGCTAC ATGCACAACC GCCTGCGCAT GGTGGTGGCG AGCTTCCTGA CCAAGGATCT GGGCATCGAC TGGCGCCGCG GTGAAGCGTA TTTCGCGCTG CAGCTCAACG ACTACGACCT CGCCGCCAAC AACGGCGGCT GGCAGTGGGC GGCATCGACC GGCTGCGACG CGCAGCCGTA TTTCCGCATC TTCAACCCGA TCAGCCAGAG CCTGCGCTTC GACGCCGAGG GGCGTTTCAT CCGCCGCTAC CTGCCGCAGC TCGCCGACCT CAGCCGCGCG GCGATCCACG CGCCGTGGCA GGCCAAGCCG CTCGAACTGC AGGCGGCGGG CGTCAAGCTC GGCCGCGACT ACCCGATGCC GGTGGTCGAA CACGCCGAGG CGCGCGAGCT GACGCTGGCG CGCTTCGCAG CGGTCAAGGG GGCGGCGGCT CGATGA
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Protein sequence | MPASFSPLAP SAPAAAAHPH RQPAVIDTPV DAALVWLRRD LRLDDHAALH HALRSAKKVW CAFIFDTTIL DALPRADRRV EFIHHGIVEL DGLLRAHGSG LIVRHGDPLQ EIPAIAGALG VQAVHINRDY EPAAVARDAQ VRGALAHAGI ALHSHKDQVI FETDEILTMA GSPFSVFTPY KNAWLKKLDG YYLRAYPVQR HIGALAPVPA ALDRGVPTLN DLDFLPTDMA ARLHPGASGG ATLLLDFLER IDRYADTRDF PAIKGPSYLS VHLRFGTVSI RQLARLAHER MVGGSRGAEV WLSELIWRDF YHQILHHHPR VVTHCYKPEY EALRWEHGKH AEQLFAAWCE GRTGYPIIDA AMLQLNRTGY MHNRLRMVVA SFLTKDLGID WRRGEAYFAL QLNDYDLAAN NGGWQWAAST GCDAQPYFRI FNPISQSLRF DAEGRFIRRY LPQLADLSRA AIHAPWQAKP LELQAAGVKL GRDYPMPVVE HAEARELTLA RFAAVKGAAA R
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