Gene Lcho_3962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3962 
Symbol 
ID6162387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4440072 
End bp4440653 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content66% 
IMG OID641666740 
Producthypothetical protein 
Protein accessionYP_001792981 
Protein GI171060632 
COG category[K] Transcription 
COG ID[COG1678] Putative transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.000136745 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCTGAGG CCGGTGCCAT CAACCTGACG AACCAGTTCC TGATTGCCAT GCCCGGCATG 
ATGGATGACC ATTTTGCCGG TGCGGTGGTC TACCTCTGCG AGCACACCGA ACGCGGTGCG 
CTGGGCCTGG TGATCAACCG GCCGATCGAC ATCAAGCTGA AGAACCTGTT CGAGCGCGTC 
GACCTCAGCC TCGACCGCGC CGATCTGGCC GACGAGCCGG TCTACTTCGG CGGCCCGGTG 
CAGACCGAAC GCGGTTTCGT GCTGCACCCG CGCAATCTCG ACGAGCCCGG CAGCTACAAC 
TCGACGCTGT CGATCCCCGG CGGCCTCGAG ATGACCACCA GCCGCGACGT GCTCGAAGCG 
CTGTCGCACG GCGCCGGCCC CAAGAAGGTG CTGATCACGC TCGGCTACGC CGGCTGGGAC 
GCCGGCCAGC TCGAAGAAGA GCTCGGCCGC AACGGCTGGC TCAACGTCGA CGCCGATCCC 
GACATCATCT TCGACACCCC GGTCGAGCAG CGCTACAGCC GTGCGCTGCT GCTGCTGGGG 
GTCGATCCGA TGATGCTGTC GCAGGACGCT GGCCACGCAT GA
 
Protein sequence
MPEAGAINLT NQFLIAMPGM MDDHFAGAVV YLCEHTERGA LGLVINRPID IKLKNLFERV 
DLSLDRADLA DEPVYFGGPV QTERGFVLHP RNLDEPGSYN STLSIPGGLE MTTSRDVLEA 
LSHGAGPKKV LITLGYAGWD AGQLEEELGR NGWLNVDADP DIIFDTPVEQ RYSRALLLLG 
VDPMMLSQDA GHA