Gene Lcho_3918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3918 
Symbol 
ID6161715 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4404615 
End bp4405262 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content68% 
IMG OID641666696 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001792937 
Protein GI171060588 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones60 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCAAC GCCTGCAGCC CGAACACGGC ACGGTCTACG TCGTCGACGA CGAAGAAGTG 
GTGCGCGACG CGCTTTCCTG GTTGCTGCGC TCGCGCCGCC TGTTGCCGCA GGCCTTCCCG 
AGCGCCGACG CGTTCTGGGC CGCGATCGAA AGCGGCGAGG TGCGCGCCGA CGACTGCGCC 
TGCGTGCTGC TCGACATGCG CATGCCGGGC ATGAACGGCA TGGCCCTGTT CCAGCGCCTG 
GTCGAACGCG GCTGGAGCAC GCTGATGCCG GTGATCTTCC TGACCGGCAA CGCCGATGTC 
TCCACCGCCG TCGCCGCAGT CAAGAACGGC GCCTTCGATT TCGTCGAGAA GCCGTTCTCC 
GACAACGCGC TGGTCGACCG CGTGATCGAG GCGCTGCAGC GCAGTGCCAA ATCGCTCGAG 
GCGCTGGCCT TGCGCAACAC GGTGCAGGCG CACCTGGGCG AACTGACCGA CCGCGAGGTC 
GAGGTGATGC AGCTGATCGT GGCCGGGCGC GCCAACAAGC AGATCGCCGA CAACCTGGAC 
ATCAGCGTGC GCACGGTCGA GGTGCACCGC TCGCGGGTGT TCGACAAGAT GGCGGTGCGC 
TCGGCGGTCG AACTCGCCAA CCTGCTGCGC GACGCCGGCC TGGCGTGA
 
Protein sequence
MNQRLQPEHG TVYVVDDEEV VRDALSWLLR SRRLLPQAFP SADAFWAAIE SGEVRADDCA 
CVLLDMRMPG MNGMALFQRL VERGWSTLMP VIFLTGNADV STAVAAVKNG AFDFVEKPFS 
DNALVDRVIE ALQRSAKSLE ALALRNTVQA HLGELTDREV EVMQLIVAGR ANKQIADNLD 
ISVRTVEVHR SRVFDKMAVR SAVELANLLR DAGLA