| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3903 |
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| Symbol | |
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| ID | 6161790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4384754 |
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| End bp | 4385866 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666681 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001792922 |
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| Protein GI | 171060573 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0522591 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCTGAAG CCGATTTCCT GTCGTTGTCG AGCCGCTTCG TGCTGGGGCC CGAGGGCCGG
CATCGCCTGC GGGTGTCACA GAGCCTGCTG GCGCTGGTGG CGTACGTGCT GTTTGCGCTG
TGCCAGCAGA TCGAGGTGCG GTTCGGCCTG ATCGAGGCCC GTGCCTCGTG GTGGCTGAGT
GCGTTCTATC TCGGTGGCGC GGTGCTGTTC TTCATCGCCA TCCGCAGCGG CTGGAGCGCC
CGGCTGGCCG ATCCGTCGAT GACGCTGGCG CAGAGCGCTT TCGGCCTGCT GGCCGTGGCG
GGGGCGTACG GCATCACCGG GCCTGCGCGC GGCGCCTTGC TGACGATTCC GGTGCTGATC
CTGATGTTCT CGATGTTCAG GCTCAACCGC CGGCAGGTGG GCGGGCTTGC GCTGGCCGCG
CTGCTGCTGT TCGCCGCCGT GATGGGGTGG CAGGTGGTGC ACGAGCCGGC GCGCCACGAC
CCGCGGGTCG AGCTGGTGCA CCTGGTGTTC GCGGTGATCG TGTTCGGCGG CATGTGGGTG
CTCTCCGACC GGCTGGCCCG CTTGAGGGCC CGCCTGACAC GCAAGCGCAC CGACCTCAGC
GAGGCCTTCG AGCGCATCCG CCAGCTGGCC ACGCGCGACG ACCTCACCGG CCTGCCGAAC
CGGCGCGCGC TGATGGACAG CCTCGTCAAC GAGACCGCGC GCCAGGCCCG CCTGGGCCAG
CCGATCGCGC TGGTGGCGAT CGATCTCGAC CACTTCAAGG CCATCAACGA CGAACACGGC
CACAAGGCCG GCGACGCGGT CCTGCGCGGT TTTGCCGAGC GCGCGCTGAC CGAACTGCGC
GGCCCCGACG TGCTGGCGCG CTGGGGCGGC GAGGAGTTCC TGCTGCTGCT GCCCGACACC
ACCGTGACGC AGGCGCTGTC GTGCGTGCAG CGCCTGCGCG AGCGGCTGGT GCTGACGCCG
TTCGACGAGG TGCAGCCAGG CCTGCGGGTG ACGTTCTCGG CCGGTGTCAC GCGCTGCCTG
GGCGGCGGCG ACATCGACGC CGCGATCGAG CGTGCCGACC GGGCGATGTA CCGCGCCAAG
GCGGCCGGGC GCGACCGTGT CGAGCGGGCC TGA
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| Protein sequence | MPEADFLSLS SRFVLGPEGR HRLRVSQSLL ALVAYVLFAL CQQIEVRFGL IEARASWWLS
AFYLGGAVLF FIAIRSGWSA RLADPSMTLA QSAFGLLAVA GAYGITGPAR GALLTIPVLI
LMFSMFRLNR RQVGGLALAA LLLFAAVMGW QVVHEPARHD PRVELVHLVF AVIVFGGMWV
LSDRLARLRA RLTRKRTDLS EAFERIRQLA TRDDLTGLPN RRALMDSLVN ETARQARLGQ
PIALVAIDLD HFKAINDEHG HKAGDAVLRG FAERALTELR GPDVLARWGG EEFLLLLPDT
TVTQALSCVQ RLRERLVLTP FDEVQPGLRV TFSAGVTRCL GGGDIDAAIE RADRAMYRAK
AAGRDRVERA
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