| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3901 |
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| Symbol | |
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| ID | 6161932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4381243 |
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| End bp | 4383327 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641666679 |
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| Product | putative site-specific recombinase transmembrane protein |
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| Protein accession | YP_001792920 |
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| Protein GI | 171060571 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4389] Site-specific recombinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0800854 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCGGTG CGCTGCGGCG CTGGTGGTCC CTGCGGGTGT GGGACCTCAC CGCCTTGCTC
AATGCGGCCG ACCCGCGTGC CAGCCGGCCC GAACGTCATC TGTGGCTGAT CCGCCTGCTC
GAATGGCTGC GCAGCGCACC GCCCTCGCAG ACCGGCGCCG AACGCAAGCC CGCCGCCGCG
CCCGAGCCCG AGGCCGGCGG CGACACCCAG CCCAGCCCGT GGCCGCTGCG CCGCCTGCGC
CACCTGCTCA ACGTCCTCGA GCGCCATCCG CAGCACGCCG AGCAGGTCCG CCAGCTGCTG
CGCGCGGTGC TGACCGGCAC CGACGTCAGC GCGCTGCTGG CCGAGTTCGG CTTCGCGCCG
CGTTCGTCGT TCGCCAGCGA GCTGATCGAG CGCCTGCGCC TGATCGGCCT GCCCGGCACC
CCCGACACCA ACGACCTCGG CGAGCTGTTC CAGCTGGTCT TCCACGGCCA TGACGACGCC
ACCTGGCTGG CGCAGATCGA CGCCGTCACC TGGCGCCGTC TGGCCCGCCT GCTGGTCGAC
GAGGAGCTGG CCGCGCACTG GCGCGGCGCG CTGCTCGACT CGATCCAGCT GCTGGCCGGC
CAGGTGCGCG CGGTCGGCAT GGCCGCCACG CTGCGCCAGC GCATGGACGA TGCGGTGCTG
GCGGGGCGGC CGTTCCACCA CCTGGCGCAG AGCGCGCAGC GCCTGGCCGA ACTCGACGCG
CTGGGCGACA GCGAGCGCCT GCACGAGCAG GCTCAGCAGC TGCGCGCCGA GCTGCTGGCC
TGCCGGCAGG CGGCGGCCTC GGTGCGCAAC CACCTCGAAG CCTGGGGCGT GTCGATCGAC
GTGGTGTTCC AGGTCGAGCA GCTGCGCGAG CGCACCGAAC GCATCAACGC CCTGCTGACC
CTGCTGACCA GCCCGCAGCC CGAGCGCGAC TGGCCATGGC TGGTGGTGCA GCTGGCCGAA
GGCGTGCGCA GCCGGCGCGG CCTGCGCAGC CTGTTCGCGC ACCACTACTC GCTGCTGGCG
CGCAAGGTGA CCGAGCGCAG CGCCGAGACC GGCGAGCACT ACATCACCCG CACCCGCGCC
GAATACCGCG AGATGCTGCA GCGCGCCTGC GGCGGCGGCC TGTTCATGGC CGGCACCACC
TTCATGAAGT TCGTGATCGG CGCGATGGGC TTCTCGGCCT TCTGGGCCGG TTTCTGGGCC
GGTGTCAACT ACGCCGGCAG CTTCGTCGCG ATCCAGCTGC TGGGCTGGAC GGTCGCCACC
AAGCAGCCGG CGATGACGGC TCCGGCGATG GCCGCCAAGC TCGACGGCGT GCAGCTCGAC
GACGCCGCGA TCGACGACTT CGTCGACGAG GTGACGCACC TGATCCGCTC GCAGACCGCC
GGCATCGTCG GCAACCTGAC GGTGGTGGCG CCGGTCGTGC TGGCGCTGCA GGGGCTGGCC
TGGTGGATCG CCGGCGTGCC CCTGATCGGC GAGACCGAAG CCCGCCACGT GCTGCACAAC
CTGACGCTGC TCGGCCCGAC GCTGGTGTTT GCCGCCTTGA CCGGCGTGCT GCTGTTCATG
TCGAGCCTGA TCGCCGGCTG GGTCGAGAAC GCCTTCGTGC TGCACCGCCT CGACAGCGCC
ATCGCCTGGA ACCCGCGCAT CGTGCGGCTG CTCGGCAGCG CCCGGGCGCA GCGCTGGTCG
CGCTGGTGGC GCACCCACAT CTCGGGGCTG GCGGCCAACG TGTCGCTCGG TTTCATGCTC
GGCCTGGTGC CGGCGCTGGC GGTGTTCTTC GGCCTGCCGG TCGAGGTGCG CCACGTCACG
CTGAGCACCG GCCAGCTGGC CGCGGCACTC GGCACGCTCG GGCTGGCGGC CTTGCACGAG
TGGGCGTTCT GGCTGTGCCT GGCGGCGATT CCGCTGACCG GCGCGCTGAA CCTGGCGGTG
AGCTTCGTGC TCGCCTTCCG GGTCGCGCTG CGCTCGCGCG GCATCCGGCT GCGCGAGCGC
TCGCGGCTCT ACCGGGCCCT GCGGCAGCGC CTGCGCGAGC AGCCGCGCAG CTTCATCGTG
CCGCCGCGCG ACGGCACGGC CGGGCCCGCC GTGCCGCACG CCTGA
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| Protein sequence | MIGALRRWWS LRVWDLTALL NAADPRASRP ERHLWLIRLL EWLRSAPPSQ TGAERKPAAA
PEPEAGGDTQ PSPWPLRRLR HLLNVLERHP QHAEQVRQLL RAVLTGTDVS ALLAEFGFAP
RSSFASELIE RLRLIGLPGT PDTNDLGELF QLVFHGHDDA TWLAQIDAVT WRRLARLLVD
EELAAHWRGA LLDSIQLLAG QVRAVGMAAT LRQRMDDAVL AGRPFHHLAQ SAQRLAELDA
LGDSERLHEQ AQQLRAELLA CRQAAASVRN HLEAWGVSID VVFQVEQLRE RTERINALLT
LLTSPQPERD WPWLVVQLAE GVRSRRGLRS LFAHHYSLLA RKVTERSAET GEHYITRTRA
EYREMLQRAC GGGLFMAGTT FMKFVIGAMG FSAFWAGFWA GVNYAGSFVA IQLLGWTVAT
KQPAMTAPAM AAKLDGVQLD DAAIDDFVDE VTHLIRSQTA GIVGNLTVVA PVVLALQGLA
WWIAGVPLIG ETEARHVLHN LTLLGPTLVF AALTGVLLFM SSLIAGWVEN AFVLHRLDSA
IAWNPRIVRL LGSARAQRWS RWWRTHISGL AANVSLGFML GLVPALAVFF GLPVEVRHVT
LSTGQLAAAL GTLGLAALHE WAFWLCLAAI PLTGALNLAV SFVLAFRVAL RSRGIRLRER
SRLYRALRQR LREQPRSFIV PPRDGTAGPA VPHA
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