| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3884 |
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| Symbol | |
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| ID | 6162334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4357511 |
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| End bp | 4359793 |
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| Gene Length | 2283 bp |
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| Protein Length | 760 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666662 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001792903 |
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| Protein GI | 171060554 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACACGCA CCCTGCCGAG GATCTGGCTC GCCCTGGCGA TGCTGTGCGG CGCCGGCTGC
TCGACGCCGC AGCCGCCGGA CTTCCAGGCC CAGCTCGAGC AGGGCCAGCA CAAGGAAGCG
CTGGTCCGCT ACGAAGAGGC CATGAACGCC CGCCCCGGCG ACCCCGAACG GCGGCTGCAG
TACTTCCGGG CACGCGACCA GGTCATCAAC CGCCTGCTCG CGCTGGGCAG CGCCGAGTTC
GGCGCCGGCC AGCTCGAACC CGCCGCGCGG GCTTGGGGCG AAGCGCTCGG CATCGACCCC
AAGAACACCC GCGCCGCCAA CGGCCTGGCC ACGATCGAGG CGGCGCGGCG CCACCAGCTG
CTCGCCGGCG ACGCCCGCGC CCGGCTCGCC GCGGGCGACA GCGCCGGCGC CGACCTGATG
GTCAAGGCCA TCCTGACCGA GAACCCCGGC CACCCCGCCG CCCGCGAACT CGACCGCGCG
CTGCGCGAGC AGGAGCGCAG GAAGTCGCTG GCGGTGCCGG TGCTGAAGTC GCGGCTGCAG
AAGCCCGTCA CGCTCGAATT CCGCGACGCG CCGCTCAAGC TGGTGCTGGA GGCGCTGGCG
CGTTCGGCCG GCATCAACTT CATCATGGAC CGCGAGGTCC GGCCCGACCT CAAGGCCTCG
ATCTTCGTGC GCGACGTGCG GGTCGAGGAT GCGCTCGACC TGCTGATCCA CAACCACCAG
CTCGAGAAGA AGATCCTCAC CGACAACACC GTGCTGGTCT ACCCGAACAC GCCGCAGAAG
CTGCGCGAGC ACCAGGAGCT GGTGATGCGC ACCTTCCACA TCGGCAACGC CGACCCGAAG
CAGACGCTCA ACCTGCTGCG CACCATGCTC AAGGTGCGCG ACGTGTTCAT CGACGAGCGG
GTCAACCTGC TGTTCCTGCG CGACACGCCC GACGTCATCC GCGCCGCCGA ACGGCTGATC
GCCGCGCAGG ACAAGGCCGA CCCGGAGGTC GTGCTGGAGC TGGAGATCCT GGAGGTCTCG
CGCACCAAGG TGCGCGACCT CGGCATCACC TACCCGAGCG AGTTCGCCGG GCCGGGTTCG
AGCGGCGCCA AGCTGTTCGA GATCGGCGAG CTCAACCGCC GCACCATCGG CGTCGACACC
GGCTACAAGC TCAAGCTGCT GCGCACCGAC GGCGACACCA AGACCCTGGC CAATCCGCGG
GTGCGGGTGC GCAACCGCGA GAAGGCGCGC GTGCACGTGG GCGACCGGGT GCCGGTGATA
TCGAGCACCA TCGTCGGCAC CACCAATCTG GGTTCGAACA ACACGCCGGT CACGACCGAG
CAGATCCAGT ACCTCGACGT CGGCATCAAG ATCGAGGCCG AGCCGACCAT CTACGCCGAC
GACAGCGTGG CGATCAGCAT CAACCTCGAC GTCTCGTCGC TGGGCAACCA GACCCGCACC
AACGCCGGCA CCACCGCCTA CGAGGTCGGC ACGCGCAACG CCAGCACCGT GCTGCGGCTG
CGCGACGGCG AGACCCAGGC GCTGATGGGC CTGATCCGCG ACGACGACGT GCAGACCGGC
GCCGGCCTGC CCTACCTCGG CGAGTTCCCG GTGCTCGACC GCATCTTCGG CAGCAAGCGC
ACCGACCGGC GCAGCCGCGA GCTGGTGCTG CTGATCACGC CGCAGCTGGT GCGCGGCATC
GAGCCGGCCG ACGCCACGCT GGCCGAGTTC TGGTCGGGCA CCGAGGCGGC GGTGCGCACC
CGCTCGCCCT TCATCGAACC GATGACCCCG GTGGCGCTGG GGCCGGCCAC CGCCACCGCC
ACCGCCACCG CCAGCACCGC GCCGACGCTC ACGCTCGGCG AGGTGGCGCC GGCCGCCGTG
CCGCTGCCGC TGAACCTGTC GTGGCTGGCG CCGGCAGCGA TCCGGGCTGG CGAGCCCTTC
GTGGTCGCGC TGCAGGCGCG CAGCGACGGC CCCGTCAAGG GCGCCTCGGT CCAGCTGCGC
TACGACGCCG CACAGCTGGA GGTGCTGGCG GTCGAGGACG GCGGCTATTT CGACCCGGTC
GGCGGCCGGG CCGTCTTCAC GCCGCGCATC GACCCGACGC TGGGGGTCGT GTTCGCGACC
GTCGGCGCGT CCGGCACCGG CTCGGCGACA GGCGACGGGC CGCTCATCAG GCTGCGCATG
AAGACACGCG GCCCGGCCGC GACCACGCGG CTGCAGATCG GCAACCTGGT CGCGGTCGAC
CCGATGAACC GGCGACTGCC GATCGAGGGA TCGGCGCCGC TGGAGCTGAC GTCACGGCCA
TGA
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| Protein sequence | MTRTLPRIWL ALAMLCGAGC STPQPPDFQA QLEQGQHKEA LVRYEEAMNA RPGDPERRLQ
YFRARDQVIN RLLALGSAEF GAGQLEPAAR AWGEALGIDP KNTRAANGLA TIEAARRHQL
LAGDARARLA AGDSAGADLM VKAILTENPG HPAARELDRA LREQERRKSL AVPVLKSRLQ
KPVTLEFRDA PLKLVLEALA RSAGINFIMD REVRPDLKAS IFVRDVRVED ALDLLIHNHQ
LEKKILTDNT VLVYPNTPQK LREHQELVMR TFHIGNADPK QTLNLLRTML KVRDVFIDER
VNLLFLRDTP DVIRAAERLI AAQDKADPEV VLELEILEVS RTKVRDLGIT YPSEFAGPGS
SGAKLFEIGE LNRRTIGVDT GYKLKLLRTD GDTKTLANPR VRVRNREKAR VHVGDRVPVI
SSTIVGTTNL GSNNTPVTTE QIQYLDVGIK IEAEPTIYAD DSVAISINLD VSSLGNQTRT
NAGTTAYEVG TRNASTVLRL RDGETQALMG LIRDDDVQTG AGLPYLGEFP VLDRIFGSKR
TDRRSRELVL LITPQLVRGI EPADATLAEF WSGTEAAVRT RSPFIEPMTP VALGPATATA
TATASTAPTL TLGEVAPAAV PLPLNLSWLA PAAIRAGEPF VVALQARSDG PVKGASVQLR
YDAAQLEVLA VEDGGYFDPV GGRAVFTPRI DPTLGVVFAT VGASGTGSAT GDGPLIRLRM
KTRGPAATTR LQIGNLVAVD PMNRRLPIEG SAPLELTSRP
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