| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3860 |
|---|
| Symbol | |
|---|
| ID | 6161173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4327664 |
|---|
| End bp | 4328584 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641666633 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001792879 |
|---|
| Protein GI | 171060530 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACGC CCTCCGACCT GCGCTTTCCG TCGATCGATG CCTTGAGGGC GTTCGATGCC
GTCGCGCGGC TGGGCAGCTA CGAGCGCGCT GCCGACGAGC TGGCCATCAC CGCCAGTGCC
GTCAGCAAGC GCATCGTCAC GCTCGAGGAC CTGCTCGGCG CGGCCCTGCT GGTGCGTGGC
GCGCGCGCGC TGGCCTTGAC GGCACACGGC AAGGAGTATC TCGCGCAGGT GCGCGCCGCG
CTCGGCCTGC TGGCCACCGT GCCCCTGCAT CAGCGCGCGC GCCAGCGCAT GCAGAAGCTG
CGGGTCAGCG CGCCGCCCAC CTTCGCCCGC CTGATCCTGG TGCCGGCGCT GGAGCAGTAC
ACCGCCGCGC ACCCGCAGGT CGAGCTGGAG GTGGTGCTGT CGATCCCGTT CCTGGAGCAC
GCCGGCTCCG CCGAGGCCGA CGTCGAGATC CGCCACGGCG ATGCCGCCGC GTTCGGTGCC
GCGCCGTTGA TGCACGACTG CGTGGTGCCG CTCGCCAGCC CCGGCCTGCT GGCGCGCTGC
GGCCTGCCGG CCGAGCCGGC CGATCTGGCG CGTTTTGCGC TGCTGCGCAC GCCGGTCGAG
CCCTGGTCGC CGTGGTTGCG CGCCGCCGGG CTCGACTGGC CCGAGCCTTC GACCGGACCG
AGGCTGGTCG ACCTGGGCCT GACGCTCGAA GCCGCCGTCT GCGGCCAGGG CATCGCGCTG
GCGCGGCCGT CGCTGGCCCG GCACTGGCTC GACAGCGGCA CCCTGCGCCC GGTGCTCAAG
GTGACGGCGA CGCCCGCGTC GCAGTATTTC CAGCTCGTCC AGACCGCCAA CCCGGCCGCG
CTCGACTTCT CGAGCTGGCT CGCCGGTGTC TGTGCCGATG CGGCGGCGCG TGGCCGCGAA
GCGCTTTCCG CCGCGGCCTG A
|
|---|
| Protein sequence | MSTPSDLRFP SIDALRAFDA VARLGSYERA ADELAITASA VSKRIVTLED LLGAALLVRG
ARALALTAHG KEYLAQVRAA LGLLATVPLH QRARQRMQKL RVSAPPTFAR LILVPALEQY
TAAHPQVELE VVLSIPFLEH AGSAEADVEI RHGDAAAFGA APLMHDCVVP LASPGLLARC
GLPAEPADLA RFALLRTPVE PWSPWLRAAG LDWPEPSTGP RLVDLGLTLE AAVCGQGIAL
ARPSLARHWL DSGTLRPVLK VTATPASQYF QLVQTANPAA LDFSSWLAGV CADAAARGRE
ALSAAA
|
|---|
| |