| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3858 |
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| Symbol | prfC |
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| ID | 6161211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4324766 |
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| End bp | 4326409 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641666631 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_001792877 |
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| Protein GI | 171060528 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAG ACACGCCTGA CACCCCGCCA TCGCCGCTCG AGCGCGACAT CCAGCGTCGC
CGCACCTTCG CGATCATTTC CCACCCCGAC GCCGGCAAGA CCACGCTGAC CGAGAAGCTG
CTGCTGTTCT CGGGCGCGAT CCAGATCGCC GGCTCGGTGA AGGCGCGCAA GGCGAGCCGC
CACGCGACGT CCGACTGGAT GGAGATCGAG AAGCAGCGCG GTATCTCGGT GGCGTCGTCC
GTCATGCAGA TGGAATACGG CGACTGCGTC ATCAACCTGC TCGACACCCC CGGCCACCAG
GATTTCAGCG AAGACACCTA CCGCGTGCTG ACCGCGGTGG ATGCGGCGCT GATGGTGGTC
GACGCCGCCA ACGGCGTCGA GGAGCAGACG CTGCGCCTGC TGAAGGTCTG CCGCGCGCGC
AACACGCCGA TCATCACCTT CGTCAACAAG ATGGACCGCG AGGTGAAAGA GCCGCTGGCG
CTGCTCGACG AGATCGAACA GACGCTGGGC ATGAGCCTGG TGCCGATGAC CTGGCCGGTG
GGCATGGGCA AGAGCTTCCG CGGCGTGATG GACCTGCAGC ACGACCGCAT GCGCGTCTTC
AAGGCCGGCG CCGACAAGAT GGAAAACGCC GGCGACGAGG TGGTCGACGG GTTGTCCAAC
CCGATCCTGG CCGAGCGTTA CGGGCTGGAC TTCCAGAACG CATCGGGCGA AATGGAGCTG
CTGCGCGAAG CGACGCCGGC ACTCGATCGC GAGGCGTTTC TCTCCGGCAG GCAGTCGCCG
CTGTTCTTCG GCTCGGCGGT CAACAACTTC GGCGTGCAGG AAGTGCTCGA CGCGCTGGTG
GCGCTGGCGC CGCCGCCCGG CGAGCGCCAG GCGCAGGAGC GCACGGTGCA GCCGACCGAG
CCCAAGTTCA CCGGCGTGGT GTTCAAGGTG CAGGCCAACA TGGACCCGGC ACACCGCGAC
CGCATCGCCT TCGTGCGCGT GAGTTCAGGC CGTTTCCAGC GCGGCATGCG CCTGAAGGTG
ACGCGCAACG GCAAGGAGAT CCGCCCGCAG ACGGTGGTGA GCTTCCTGTC GCAGCGCCGC
GAACTGGTCG ACGACGCGGT GGCCGGCGAC ATCATCGGCA TCCCCAACCA CGGCGTGCTG
CAGCTCGGCG ACACGCTGAC CGAAGGCGAG ATGCTGCACT ACACCGGGCT GCCGTTCTTC
GCGCCCGAGA GCTTCCGCAC CGTCGAGCTG CGCGACCCGC TGCGCAGCAA GCAGCTGCGC
CAGGGCCTGC AGCAGCTGGG CGAAGAAGGC GCGATCCAGG TCTTCACCCC GGTGGCCGGC
GGCTCGCTGA TGCTGGGCGC GATCGGCCAG CTGCAGTTCG AGGTGGTGCT GCACCGGCTC
AAGGGCGAAT ACGGCGTCGA GGCCCGGCTC GACCCGTGCC GCTTCTCGAT CGCACGCTGG
ATCACCTGCG CCGACGAGGC CAAGCTCAAG AAGTTCATCG ACAGCGAGCC GCTGCGCATC
GCCCACGACG TGGTCGGCGC GCCGGCCTTC ATGGTGCAGT ACAGCTCCGA CCTGCGGGTG
ACGCAGGAGC GCGTGCCCGA CATCCAGTTC CACTCGATGC GCGAGCACTC GGGGCGGGTG
TTCAACGCCG CGCCGTCGCT CTGA
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| Protein sequence | MSTDTPDTPP SPLERDIQRR RTFAIISHPD AGKTTLTEKL LLFSGAIQIA GSVKARKASR
HATSDWMEIE KQRGISVASS VMQMEYGDCV INLLDTPGHQ DFSEDTYRVL TAVDAALMVV
DAANGVEEQT LRLLKVCRAR NTPIITFVNK MDREVKEPLA LLDEIEQTLG MSLVPMTWPV
GMGKSFRGVM DLQHDRMRVF KAGADKMENA GDEVVDGLSN PILAERYGLD FQNASGEMEL
LREATPALDR EAFLSGRQSP LFFGSAVNNF GVQEVLDALV ALAPPPGERQ AQERTVQPTE
PKFTGVVFKV QANMDPAHRD RIAFVRVSSG RFQRGMRLKV TRNGKEIRPQ TVVSFLSQRR
ELVDDAVAGD IIGIPNHGVL QLGDTLTEGE MLHYTGLPFF APESFRTVEL RDPLRSKQLR
QGLQQLGEEG AIQVFTPVAG GSLMLGAIGQ LQFEVVLHRL KGEYGVEARL DPCRFSIARW
ITCADEAKLK KFIDSEPLRI AHDVVGAPAF MVQYSSDLRV TQERVPDIQF HSMREHSGRV
FNAAPSL
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