Gene Lcho_3831 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3831 
Symbol 
ID6161431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4294152 
End bp4294700 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content69% 
IMG OID641666604 
Productpeptidoglycan-associated lipoprotein 
Protein accessionYP_001792850 
Protein GI171060501 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID[TIGR02802] peptidoglycan-associated lipoprotein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.38752 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTCGAC TCACTTCTGC TGCTCTGGTC GCGCTGACGC TGGCCGCTTG CTCCAGCACC 
CCTCCCGCTC CCGCTCCGGC TCCGGCCCCC GCTCCGGTTG CTGCCGCACC CGCCCCGGCA 
CCCGCTCCGG CACCGACCCC GGCTGCTGCC GCTCCGGCTC CGGCGCCCCA GGTGGCCGCT 
GCTGCGCTGG CTCCGCACCT CGACCCGAAC CACGCGATCT CCAAGCAGCG CAGCGTGTTC 
TTCGACTTCG ACGAGTTCGT GATCCGCACG CAGGACCGCC CGGTGGTCGA ACTGCACGGC 
AAGTACCTGG CTTCGACCCC GGCGCTGAAG GTCGTGATCG AAGGCAACGC CGACGAGCGT 
GGCAGCCGCG AATACAACCT GGCCCTGGGC AACAAGCGCG CACAGGCCGT GGTGCAGTCG 
TTCAAGCTGC TCGGCGCCGC CGACGGCCAG ATGGAAGCCA TCAGCTACGG TGAAGAGCGC 
CCGATGGACG CCGGCCACGA CGAAGCCGCC TGGGCCAAGA ACCGTCGCGC CGACGTTCGC 
TACAAGTAA
 
Protein sequence
MIRLTSAALV ALTLAACSST PPAPAPAPAP APVAAAPAPA PAPAPTPAAA APAPAPQVAA 
AALAPHLDPN HAISKQRSVF FDFDEFVIRT QDRPVVELHG KYLASTPALK VVIEGNADER 
GSREYNLALG NKRAQAVVQS FKLLGAADGQ MEAISYGEER PMDAGHDEAA WAKNRRADVR 
YK