Gene Lcho_3826 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3826 
Symbol 
ID6161890 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4288667 
End bp4289329 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content72% 
IMG OID641666599 
Producthypothetical protein 
Protein accessionYP_001792845 
Protein GI171060496 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.422395 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCTTTG CCGTGCACAG CCTGCCGGCG GCCACGCTCG ATGACGACGG CATGCGCCGC 
ACCCGCATCG GCCGCATCAA GATGCTGCTG CTGCTGCTGG TCTGCGCGTC GCCGGTGATC 
GCCTCGTACT TCACCTACTA CGTCATCCGG CCGCAGGCGC GCACCAACTA CAGCACGCTG 
ATCGAGACGC CGCGCTATCT GCCCGAGCCC AGCCAGCTCA GCCTGCTCGA CGCCCAGCAG 
CGCCAGGTCG ACCCGCGCAG CCTGCGCGGC CAGTGGCTGC TGATCGTGGT CGCCGACGGC 
GCCTGCGACG CCCGCTGCGA AAAGATGCTC TACGCCCAGC GCCAGCTGCG CGAGACGCTC 
GGCCGCGAGA AAGACCGGCT CGACCGCGTC TGGCTGGTCA CCGGCGACCA GCCGCCACGT 
GCCGACCTGC TGCCCGCGCT GGCCCAGGCC ACGGTGGTGC AGGCGGTGCC GGCCCAGATC 
GCCGCCTGGC TGCAGCCCGC CGAAGGCCAC ACGCTGGGCG AGCACCTGTA CCTGGTCGAC 
CCGATGGGCT ACTGGATGAT GCGCATGCCG GCCGACTTCG AGCCGGCCAA GGTCAAGCGC 
GACCTCGACC GCCTGCTGCG CGCCGCCGCC TCGTGGGACA AGCCGGGCCG CGGTCCGCTC 
TGA
 
Protein sequence
MSFAVHSLPA ATLDDDGMRR TRIGRIKMLL LLLVCASPVI ASYFTYYVIR PQARTNYSTL 
IETPRYLPEP SQLSLLDAQQ RQVDPRSLRG QWLLIVVADG ACDARCEKML YAQRQLRETL 
GREKDRLDRV WLVTGDQPPR ADLLPALAQA TVVQAVPAQI AAWLQPAEGH TLGEHLYLVD 
PMGYWMMRMP ADFEPAKVKR DLDRLLRAAA SWDKPGRGPL