Gene Lcho_3794 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3794 
Symbol 
ID6160721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4252992 
End bp4258913 
Gene Length5922 bp 
Protein Length1973 aa 
Translation table11 
GC content69% 
IMG OID641666567 
Productfibronectin type III domain-containing protein 
Protein accessionYP_001792813 
Protein GI171060464 
COG category[S] Function unknown 
COG ID[COG4733] Phage-related protein, tail component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAAAAA GCACCCGATT CATCCGCACG CCGATCGCGG CGGCCACCAG TGTCCTGGCG 
GTCCTGCTCG GCACCGGCTT GACCGCCCAG GCCGGCGTCG GCTTTGGCGA AAGCCAGGAT
TTCTCCGGCA ATCCGGTCTC GAACATCCGT TCCCATTTTG CGCACAGCCC GCGTGGCGAC
CGCGAGAGCG CCAACCCGAC GGCGGCCGAC GAAGCGGCCC GCCTGTTCGG TGCCGGCAAG
CTGATGGGCG CCAGCGCGGT CGACACCGGC CGCGCGCTGC GCAAGTTCGT CGATCCGCTG
CCGCTGCCCG GCCAGCCGCA GACGATGGCC GACGGCACCG TGCGTTATCT GCCGGTGGCC
GCGCCCACCA AGTGGATCAA CCCGCAGACC GGCCAGCCCA CCGGTGACGA CTACTTCGAA
GTGGCGGTCA TCGAATACAA GCAGAAGCTG CACTCCGACC TGAAGAACCC GACCACCATC
CGCGGCTACG TCCAGCTGTC GACCGCGGCG GTGCCGGGCA AGCAGGTGCC GCTGTTCTAC
CCGGACGGCG TCACGCCGAT CCTGGTGCAG GAGACCGACG CGCGCGGTTT CCTGGTCTTC
AACACCGACG GCAGCCGCAA GATGGTGCAG GCGCGTGCGG TCGACGATCC GCACTTCCTC
GGCCCGGTCA TCCAGGCCCG CCAGGGCGTG CCGACGCGCT TGAAGTTCAT CAACCTGCTG
CCCTTCGGCC GTGCCGAACT CGGCGCGCCC GACGCCGACG GCAAGCCGGT GGTGACTGCC
CGCAACGGCG ACATCTTCCT GCCGCTGGAC AAGTCGATTG CCGGCTCCGG CCTCGGCCCG
GACGGCTTCA CCGAATACAC CCAGAACCGC GCCAACATCC ACCTGCACGG CGGCGACACG
CCGTGGATCA GCGACGGCAC GCCGCACCAG TGGATCGCCC CGGCCGAAGA GGCCAACGCC
GCCAACGGCC GCGGTCTGGC CGCGCAGAGC ATCGATCCCG AGTTCCTGCC CAGCTTCCTG
CGCGGTCCGG GCGCGATCAA CGTGCCCGAC ATGCCCGATC CGGGCCCGGG TGCGATGACG
TACTACTTCC CGAACGGCCA GTCGGGCCGC ATGCTGTGGT ACCACGATCA CTCGATCGGC
ATGACGCGCC TGAACGTCTA CGCCGGCATG GCCTCGGCCT ACCTGCTGGG CGATGCGGTG
CAGGACGCGC TGATCAGCGG CGGCTCGGCC ACCGTCAACG GCAAGAGCGC CACCTTCCAG
GCGGTGCTGC CGCCGGCGGC CGACACCATT CCGCTGGTGA TGCAGGACCG CACCTTCGTG
CCGGCCGACG TCGCGCTGCA GGACGCGCGC TGGAACACCA GCGCCTGGGG CGCCGAGAGC
GACTCGTGGT TCCCGCACGT CTATGAAACG GTCCAGGATC CGAACCAGCT CAACGGCTTC
AATGCCGTCG GTCGCTGGCA CTGGGGCCCG TGGTTCTGGC CGGTGTTCCC GGCGCTGTAC
GACCTGCCCT CGGGCGAATA CGGCGACGTC ACCGTCACGC CCGAAGCGTG GATGGACACC
GCGATGGTCA ACGGCGTGGC CTACCCGACG CTCGACGTCG ATCCGAAGAC CTACCGTTTC
CAGATCCTGA ACGCCTCGAA CGACCGTTCG ATGAGCTTCA ACCTGTTCGT CGCCGACGAC
GCCCAGCCGT TCACCGACCC GGTCACCGGC GACGTGCGCC TGACCGAAGT GAAGATGGTC
GACGCGGTCA TTCCTGCCGA CCTCTGCAGC GGCGACCAGA CGCGTGCGGT GCAGCCCGAC
GGCAGCATCT GCACGCCCGC CACCTGGCCG ACCGATGGCC GCGCCGGTGG CGTGCCGTCG
CCGGCCTCGC AGGGCCCGAC GCTCTACCAG ATCGGCAGTG AAGGCGGCCT GCTGCCGCAG
GTGGCGGTGA TCGACCCGGT GCCGGTCAAC TACAACTACG ACCGCGGTCG CATCACGGTG
CTCAATGTGC AGACCCCGGC GCTGCTGCTG GGCAATGCCG AACGCGCCGA CGTGGTGGTC
GACTTCTCGC AATACGCGGG CAAGACCCTG ATCGTCTACA GCGATTCGCC GGCCCCGATG
CCGGCCGGCG ACCCGCGCAA CGACTACTTC ACCAACGTGG GTGACCAGTC GACCGAGGGC
GGTGCCGAGA ACACCAAGCC CGGCTACGGC CCGAACACCC GCACCTTCAT GCGCATCAAG
GTGCGTGCGG CCGCCCCGGC GCCCGCGCTC GACGTGGCCG CGCTGAAGGC CGAGATCCCC
AAGGCCTACG CGCTGTCGCA GGAAACCCCG GTGGTCGGCC AGAAGGAATA CAACACCGCC
TTCGGCACCA GCTGGACCGA CAGCGGCGCC TACGCCGACA TCTACGCCGG CTCGCTCAAG
CAGCCGCTGT TCAAGTACAC CCCCGGCACG CCCAACGGCG GCGGGTTCAA CAGCGTCAAG
GTCACGCAGA TCGGCTCGGG CTACGTGAGC GCACCGACCG TCACCTTCGC CGACAGCACG
GTCGGCAACG AGGTCGGTGC CAAGGCCCAG GCGACGCTGA AGATGAGCGC CATCACCGTC
ACCGATCCGG GTGCGGGTTA CGTGTCGGCA CCGATCGTGA GCATCGTCGC CCAGTCCGGC
GGCGGCTCCG GCGCCGTGGC CGAAGCGCGT CTGGCGATCG ACAAGATCAC CATCACCAAC
GGCGGCGCCG GTTACACCTC GGCTCCGGCG GTGCGCTTCT CGGTGCCGCC CACCGGCGGC
GTGCAGGCCA GCGGCACGGC CATCGTCACC AACGGCCGCG TCACCGGCGT GACCCTCGAC
AACCCGGGTT CGGGCTATGT GGGCGCACCG ACCGTGAGCT TCCAGGGCGG TGGTGCCACC
ACCACGGCAC GTGCCACGGC CACCGGCAAG ATCTCCGACG TCAAGCTGCT GTCGCTCGAC
CCGATGAACC CGATCGTCTA CAACGCCGAC GGCAGCATCG CCTCGCTCGG CGCAGCCGGC
GGCGGTGGCT ACACCGACAT GAGCCAGGTG CTGATCAACT TCAACGGCGG CGTGGCTCCG
GCCGGTGGCC GCGCGGCGAT CGCCAGCGCC TCCGGCAGCC TGTTCGACGT GACGATGGTC
AACCACGGCG TCAACTACAC CGCCAACACC ACCATTGCCT TCAGCGGCGG CGGCGGTTCG
GGTGCGGCGG CCCAGGTCGA CACGCTCAAC GGCGGCACCG CGACCGGCTC CAACCTGGTC
AAGACCAAGG CGATCCACGA GCTGTTCGAG CCGACCTTCG GCCGCATGAA CGCCATCCTG
GCGGTGGAAA TCCCGTTCAC CAGCGCGCTG ACGCAGACCA CCATCCCGCT GGCGATGATC
GACGCCCCGA CCGAGCGTTT TGCCGACGGC GAGACGCAGA TCTGGAAGAT CACGCACAAC
GGCGTGGACA CCCACCCGGT GCACTTCCAC CTGCTCAACG TGCAGCTGAT CAACCGCGTG
GGCTGGGACG GCTGGATCGA CCCGCCGGCT CCGAACGAGC TGGGCTGGAA GGAAACCATC
CGCATGAACC CGCTCGAGGA CGTGATCGTG GCGGTGCGCG CCAAGCGTCC GCCGCTGCCG
GGCTTCGGCG TGCCCAACAG CATCCGGCCG ATGGACCCGT CGCAGCCGAT CGGCTCGCCG
TACGGCTTCA CGCAGATCGA CCCGAACACC GGCACGCCGC TGTCGGTGGT CAACGAAGTC
ATGAACTACG GCTGGGAATA CGTGTGGCAC TGCCACATCC TCGGCCACGA GGAAAACGAC
TTCATGCGTC CGATCGTGTT CGACGCCAAC GAAGCCGTTC CGACCGCGCC GGGCGCGCTG
ACCGCATCGG CCAACGGCTC GGGTTCGGGC GTGCTGCTGG GCTGGAGCGA CACCTCCGCC
ACCGAGTACC AGTTCCGCGT CCTGCGGGCC ACCGGCGCAG CCGGCACGGT CTTCACGCCG
ATCGGCACCG CACTGGCCAA CGGCGGCAGC TACCTCGACA ACACCGCCCA GCCGGGCACC
AGCTACCGCT ACCAGGTGGT GGCGGTGGGT GCCAACGGTG AAGCGGCCTC GGGCATCGCC
GACATCACCA CGCCGACCGG TGCCCCGGTC GTGCCGGCCG CCGTGCAGGC GACCCAGCTG
AGCGCCGACA GCGTGCGGCT GCAGTGGCTC GACCAGTCGA CCGACGAAGC CGGCTTCGCC
GTCGAGGTGT CGGTCAACGG CGGCGCCTTC GCGGCACTGA CCACGGTGGG CAGCAGCGCC
GCCAACGTCA CGGCCACCGG CATCACCGTC ACGTTCGACA ACGCAGGTGC CGCGGTCGGC
AGCACCTACA CCTACCGTGT GGCTGCCGTG AACGCCAGCG GTGCGGCCTC GGCCTACGTC
AACTCCAACA CCGTCACGGT GATGGGCCCG CCGGCTGCGC CGAACACGCT GACGGCCATC
GTCAACTCGA AGACCCAGGT CGCACTGAAC TGGATCGACG GCTCGACCGA TGAAAGCCAG
TTCGTGATCG AGGCGTCGGT CAATGGCGGC GCCTTCGCCG CGGTCAGCAC GCTGGCCACG
CCGTCGGCCG GCGCCAGCGG CGGTGCGGTC ACCACCAACG TGGCGGTGGT CAACGGCAAC
ACCTACGTGT TCCGTGTCGC TGCGTCCAAC ACCTGGGGCA GCTCGACCTA TGCCACCTCG
GCCTCGGTGC CGGTGATGAT CGCCCCCAAC GCGCCGACGG CTCAGACCGT GTCGGTGGCC
GGCGCAGCGG TGACGCTGAA CTGGCTGGAC AACGCGACCG ACGAGACCAG CTTCGTGGTC
GAAGGCTCGC TCAACGGCGG CGCCTACGCC ACGGTGGCCA CGGTGACGCG AACGGCGGCA
CAGGCCACCG ACAGCGCGAC GCCGGTTTCG ACCAGCGTGA CCGCAGCCGC GGGCACCTGG
ACCTACCGCG TGCGTGCGAT CGGCGCGGGG GGTGCCTCGG CCAACAGCGA CTGGGCCAAC
AGCGTGACGG TGACGGCCAC CGGCCCGGCT GCGCCCACCA CGCTGACGGC GGTGCTGCAG
TCGTCGACCC GGGTTCGGCT GAGCTGGGTG GATGCGTCCA CCAACGAGAC CAGCTTCCTG
ATCCAGCAGT CGGTCAACGG CGGCGCCTTC ACGCAGATCG GCACCGTGAA CCGCAGCGCG
GCGCAGGGCG CAGCCAGCGG TGGCGTGCTC AGCTCGCAAC CGACGGTCGC GGCCGGCAAC
ACGTATGTGT TCCGCGTCAT TGCACGCAAC GCCTCGGGTA GCTCGGCTCC GGCCGACGTC
ACGATCACCG TTGCCGTGGC ACCGGCGGCC AACCTGGCTG TGGCGGCTGT CAGCGCCACC
TCGGCCCGCC TGAGCTGGAC CGACGGCGGC CCGCTGGAGA CCGGCTACCG CGTCGAGCGC
AGCACCGACG GCGTCAACTG GACCGTGTTG AGCACCACCG CCGCCAACGC CACCGGCTAC
ACCGCCACCG GCCTGACGAC GGGCACGACC TACCAGTTCC GCGTCACCGC GGTGCGTACC
TCGGGTGGCG TCACGACCAC GGCCACGCCG GTGGAAGTGA GCTACACGGT GGTGGCACCG
CCGGTGCCGA CCGCGCCGAG CGCCCTGGCG GTCAACGCCA CCGCGCAACG CTCGGTCACG
CTGGGCTGGG TGGACAACGC CAACAACGAG ACCAGCTACC GCGTCGAAGC CTGCCTCGGC
ACCTGCACCG ATGCATCGAC CTGGGTGCTG GCGGCCACGT CCACCGCGAG CGCCACGCAG
CAGACGGGCA CCGGTGCCCG CACGCTGACG GTCAGCCGCA TCTCCGCCAA CGGCAACAAC
CGCCTGGCCG CTGCCACGAC CTACAGCTTC CGGGTGGTCG CGGTGGGTGC CTCGGGCAAC
AGCGGGGTCA GCAACATCGT GACCGCCACG ACGCTGCCCT GA
 
Protein sequence
MRKSTRFIRT PIAAATSVLA VLLGTGLTAQ AGVGFGESQD FSGNPVSNIR SHFAHSPRGD 
RESANPTAAD EAARLFGAGK LMGASAVDTG RALRKFVDPL PLPGQPQTMA DGTVRYLPVA
APTKWINPQT GQPTGDDYFE VAVIEYKQKL HSDLKNPTTI RGYVQLSTAA VPGKQVPLFY
PDGVTPILVQ ETDARGFLVF NTDGSRKMVQ ARAVDDPHFL GPVIQARQGV PTRLKFINLL
PFGRAELGAP DADGKPVVTA RNGDIFLPLD KSIAGSGLGP DGFTEYTQNR ANIHLHGGDT
PWISDGTPHQ WIAPAEEANA ANGRGLAAQS IDPEFLPSFL RGPGAINVPD MPDPGPGAMT
YYFPNGQSGR MLWYHDHSIG MTRLNVYAGM ASAYLLGDAV QDALISGGSA TVNGKSATFQ
AVLPPAADTI PLVMQDRTFV PADVALQDAR WNTSAWGAES DSWFPHVYET VQDPNQLNGF
NAVGRWHWGP WFWPVFPALY DLPSGEYGDV TVTPEAWMDT AMVNGVAYPT LDVDPKTYRF
QILNASNDRS MSFNLFVADD AQPFTDPVTG DVRLTEVKMV DAVIPADLCS GDQTRAVQPD
GSICTPATWP TDGRAGGVPS PASQGPTLYQ IGSEGGLLPQ VAVIDPVPVN YNYDRGRITV
LNVQTPALLL GNAERADVVV DFSQYAGKTL IVYSDSPAPM PAGDPRNDYF TNVGDQSTEG
GAENTKPGYG PNTRTFMRIK VRAAAPAPAL DVAALKAEIP KAYALSQETP VVGQKEYNTA
FGTSWTDSGA YADIYAGSLK QPLFKYTPGT PNGGGFNSVK VTQIGSGYVS APTVTFADST
VGNEVGAKAQ ATLKMSAITV TDPGAGYVSA PIVSIVAQSG GGSGAVAEAR LAIDKITITN
GGAGYTSAPA VRFSVPPTGG VQASGTAIVT NGRVTGVTLD NPGSGYVGAP TVSFQGGGAT
TTARATATGK ISDVKLLSLD PMNPIVYNAD GSIASLGAAG GGGYTDMSQV LINFNGGVAP
AGGRAAIASA SGSLFDVTMV NHGVNYTANT TIAFSGGGGS GAAAQVDTLN GGTATGSNLV
KTKAIHELFE PTFGRMNAIL AVEIPFTSAL TQTTIPLAMI DAPTERFADG ETQIWKITHN
GVDTHPVHFH LLNVQLINRV GWDGWIDPPA PNELGWKETI RMNPLEDVIV AVRAKRPPLP
GFGVPNSIRP MDPSQPIGSP YGFTQIDPNT GTPLSVVNEV MNYGWEYVWH CHILGHEEND
FMRPIVFDAN EAVPTAPGAL TASANGSGSG VLLGWSDTSA TEYQFRVLRA TGAAGTVFTP
IGTALANGGS YLDNTAQPGT SYRYQVVAVG ANGEAASGIA DITTPTGAPV VPAAVQATQL
SADSVRLQWL DQSTDEAGFA VEVSVNGGAF AALTTVGSSA ANVTATGITV TFDNAGAAVG
STYTYRVAAV NASGAASAYV NSNTVTVMGP PAAPNTLTAI VNSKTQVALN WIDGSTDESQ
FVIEASVNGG AFAAVSTLAT PSAGASGGAV TTNVAVVNGN TYVFRVAASN TWGSSTYATS
ASVPVMIAPN APTAQTVSVA GAAVTLNWLD NATDETSFVV EGSLNGGAYA TVATVTRTAA
QATDSATPVS TSVTAAAGTW TYRVRAIGAG GASANSDWAN SVTVTATGPA APTTLTAVLQ
SSTRVRLSWV DASTNETSFL IQQSVNGGAF TQIGTVNRSA AQGAASGGVL SSQPTVAAGN
TYVFRVIARN ASGSSAPADV TITVAVAPAA NLAVAAVSAT SARLSWTDGG PLETGYRVER
STDGVNWTVL STTAANATGY TATGLTTGTT YQFRVTAVRT SGGVTTTATP VEVSYTVVAP
PVPTAPSALA VNATAQRSVT LGWVDNANNE TSYRVEACLG TCTDASTWVL AATSTASATQ
QTGTGARTLT VSRISANGNN RLAAATTYSF RVVAVGASGN SGVSNIVTAT TLP