Gene Lcho_3791 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3791 
Symbol 
ID6160718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4249503 
End bp4250156 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content72% 
IMG OID641666564 
Productelectron transport protein SCO1/SenC 
Protein accessionYP_001792810 
Protein GI171060461 
COG category[R] General function prediction only 
COG ID[COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGTCT CCATCCGACC CCGACCCGCA GCCCGCCGCC GGCCGAGCCT GCGCGCCCTG 
TGCCTGGGCC TGAGCGCCGC GCTGGCCTGT GCCGCCGGCA TGGCCAGCAA TGCGCCGGCC 
GATGACGTCT GCCACGGCCA GGCGGCCGAG ATCGCCCCGG GCATCAAGCG CAGCGTCGCG 
GCCTATCCGA TGCCCGCGGT CAGCCTGACA CGCGCCGACG GCAAGCGCCT GAGCGCGGCC 
GAGGCGCTCG ACGACGGCCG GCCGGTGATG CTCAACTTCG TCTACACCTC GTGCAACACG 
ATCTGCCCGG TCACCAGCCA GGTGTTCATG CAGACCCGCG AGCTGCTGGG CGCGCAGCGC 
GAGCAGGTCA ACATGGTGTC GATCTCGATC GACCCGGAGC AGGACACGCC GCGCAAGCTC 
AACAGCTACG CCAGGCGCTA CGCCGCCGCG GGTGCATGGG CCCACTACAC CGGCAGCAAC 
GCCGAATCGG TGGCGATGCA GCGGGCCTTC TCGGCCTGGC GTGGCGACAA GATGAACCAC 
CTGCCGCTGA CCTTCCTGCG TGCCGCGCCG GGCCAGCCCT GGGTGCGGCT CGACGGCTTC 
GCGAGCCCCG AGCAGCTGCT GGCCGAATAC CGCCGCATGG TCGCGGCGCG CTGA
 
Protein sequence
MSVSIRPRPA ARRRPSLRAL CLGLSAALAC AAGMASNAPA DDVCHGQAAE IAPGIKRSVA 
AYPMPAVSLT RADGKRLSAA EALDDGRPVM LNFVYTSCNT ICPVTSQVFM QTRELLGAQR 
EQVNMVSISI DPEQDTPRKL NSYARRYAAA GAWAHYTGSN AESVAMQRAF SAWRGDKMNH 
LPLTFLRAAP GQPWVRLDGF ASPEQLLAEY RRMVAAR