| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3743 |
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| Symbol | |
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| ID | 6161212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4200715 |
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| End bp | 4201839 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641666516 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001792762 |
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| Protein GI | 171060413 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCGCC TTGTTTCTTC GTCGTCACCT CGTTTTCTGG CCAGCCGATG GGCGCGGGCC
GTGCTGCTGG CGGCCGCGCT GAGTTCGGGC GCACAAGCCG CCGGCATCGA GGTCACCACG
ATCGTGGTCC AGCCCTCGCG CAGCAGCGCG GCGGTGGCGC TCGACGGCAG CGTGCAGGCG
CTCAAGCAGG CGACGGTTGC GGCGCAGGTC GGCGGCAATG TGTTGAGCCT GGCGGTCAAG
GCCGGAGACA AGGTGCGCGC CGGCCAGCTG CTCGCCCGCA TCGACGAACG TGCCACCGCC
GCTGGCTTGG CCGAAGGCGA CGCCGCCGTG GCGCAGGCCG AAGCCGCGCT GCAGCGCGCC
CGCACCGAAC TCGACCGCAC TCGCGAGCTG CTCAAGCAGG GTTACGTCAG CCAAGCCGCG
TTCGACAACG CCGAAACCCA GCACCGCGCC ACCCAGGCCG GCCTGCAGCA GGCTCAGGCC
GCGCGCAGCC AGGCCGTGCT GGCGCGGGGT TTTGCGAGCG TGACGGCGCC GTTCGATGGC
CTGGTGCTCG CCACCCATCT CGACGCCGGC GATCTGGCCA GCCCCGGCCG CCCGGTGCTG
ACGCTCTACG CGCCCGGCAC GATGCGCGCG GTGGTGCAGC TGCCGGCGTC GCTGGCGGCG
CAGGCCCGCA GCGCGCAGCA GATCGAGATC GAGCTGCCCG ATGGCCGCAT CGTCAGCCCG
CAACGCCGCA CCGAACTGCC CGGCGCCGAC GCGGTGTCGC AGACGGTCGA ATGGCGCCTC
GACCTGGCGC CGGCCGACAG CGCCGGTCTG CTGCCCGGGC AGAGCGTGCG GGTGCGGTTT
GCCGGTGCAG CCGATCGCAA GGCCGACGCG CCCACGTCAG GTTCTTCAGG TCCGGCGAGC
CTGAGCGTGC CGGCGGGCGC GCTGCTGCAC CGCGGCGAGC TGAGCGCGGT CTACGTCGCA
CAGGGCACGC AGTTCGTGCT GCGCGCGGTG CGCAGCGGCC CGGTGCAGCA AGGCCAGGTC
AAGGTGCTGG CGGGGCTGAA GGCCGGCGAA CGCGTCGCCG TCGATGCGAT ACGGGCCGGC
CTGGCCCAAG CCCGCCCGGC GGGCAGCGCC AGCAGCGCGC CGTGA
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| Protein sequence | MSRLVSSSSP RFLASRWARA VLLAAALSSG AQAAGIEVTT IVVQPSRSSA AVALDGSVQA
LKQATVAAQV GGNVLSLAVK AGDKVRAGQL LARIDERATA AGLAEGDAAV AQAEAALQRA
RTELDRTREL LKQGYVSQAA FDNAETQHRA TQAGLQQAQA ARSQAVLARG FASVTAPFDG
LVLATHLDAG DLASPGRPVL TLYAPGTMRA VVQLPASLAA QARSAQQIEI ELPDGRIVSP
QRRTELPGAD AVSQTVEWRL DLAPADSAGL LPGQSVRVRF AGAADRKADA PTSGSSGPAS
LSVPAGALLH RGELSAVYVA QGTQFVLRAV RSGPVQQGQV KVLAGLKAGE RVAVDAIRAG
LAQARPAGSA SSAP
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