| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3740 |
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| Symbol | |
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| ID | 6163825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4195907 |
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| End bp | 4197232 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641666513 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_001792759 |
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| Protein GI | 171060410 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCCCG ATGCCGATGC GCTGCTCGCG CTGTTGCAGA CCACCCGCTC GGCGGCCACG
CCGGCCGAGC GGCAGTTCGT GTTGCTCAAC CGCACGCGCG AGGCCGTGCC CTATCACGCC
GCCGTGTCGT GGCAGGCCCG ATCGGGCCTG CTGCTGCACT CGGGCGTCAG CAGCGTCGAC
GGCCAGGGCC CCTACGGGCT GTGGCTGAAG CGGCTGGCGC GTGGGTTGGC ACGCCGCCCG
GCCGGGCTGG TCGACGCCGC CGATGTGGAC GCCGCCGTGG CCGAGGAATG GCCGCAATGG
TGGCCGCCGC ACCTGCTGTG GCTGCCCGCC GGTGCGGCCG ATGGCACCGA CCTGCTGCTG
GTGCGCGAGG TGGCCTGGCG CGAGGCCGAA CAGCAGGGCC TGGCGCAATG GGCCGATCTG
TGGCGGCTGG CCGACCAGGC GGCGGCCGGC TCGCGGCGGC GTCGGGTATT CGATCCCGGT
GCGTTGTGGC TGGCCTTGCG CCGGCCCGGT CGCGCCGGCC GGATCGGCAG GAAGCGCTGG
ATCGCGCTCG CGCTGCTGTT GCTGACGCTG CTGCCGGTGC GCCAGAGCCT GCGCGCGCCG
GGCGAGCTGG TGCCGCGTGA GCCGACCGTG GTGCGCGCGG CGATCGAAGG CACGGTGCGG
CGCCTGGTGG TCGAACCGAA TCAGGTCGTG CAGGCCGGCC AGGTGCTGGC CGAGCTGGAC
GACGACGCCT TCGCCAGCCG GCTGCAGGTG GCGCGGCAGG CGCTGGGCAC GGCTGAAGCC
GAGTGGCGCC AGACCCATCA GCAGGCGCTG GTCGATCCAC GCGCCAAGGC GCAGCTGCCG
ATCGTGCAAG GCAAGCTCGG CGAGCGCCAG ACCGAGCTGC GTTACCTCGA ACAGCAGATG
CAGCGCACCG CGCTGGTGGC GCCGCACGCT GGTGTGGTGC TGGTCGACGA CGCCGGCAGC
TGGGCCGGCC GCACGGTGCA GGCCGGCGAG GCGCTGCTGC GCCTGGCGCA GCCGCAGGAC
CAGGAGCTCG AAGCCTGGCT CGCGGTGGGC GACGCGATCG AGCTGGCCGA CGGCAGCGCG
ATGAACCTGC ACCTGTCGAG CCGACCGGCC GATCCGGTCG CGGCGACGTT GCGGCTCTAC
GCCTTCGAGG CCGAACACCG ACCCGACGGC ACGCTGGCCT ACCGCCTGCG CGGCACCCTC
GCCGCACCCG CCAGCGAGCG GCTGGGCGCG CGCGGCACGG TGCGCATCGA CGGGCCGCAG
GTGCCGCTGA TCTACGCCGT GCTGCGCCGG CCGCTGGCTG CGCTGCGTGA AATGACGGGT
TGGTGA
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| Protein sequence | MIPDADALLA LLQTTRSAAT PAERQFVLLN RTREAVPYHA AVSWQARSGL LLHSGVSSVD
GQGPYGLWLK RLARGLARRP AGLVDAADVD AAVAEEWPQW WPPHLLWLPA GAADGTDLLL
VREVAWREAE QQGLAQWADL WRLADQAAAG SRRRRVFDPG ALWLALRRPG RAGRIGRKRW
IALALLLLTL LPVRQSLRAP GELVPREPTV VRAAIEGTVR RLVVEPNQVV QAGQVLAELD
DDAFASRLQV ARQALGTAEA EWRQTHQQAL VDPRAKAQLP IVQGKLGERQ TELRYLEQQM
QRTALVAPHA GVVLVDDAGS WAGRTVQAGE ALLRLAQPQD QELEAWLAVG DAIELADGSA
MNLHLSSRPA DPVAATLRLY AFEAEHRPDG TLAYRLRGTL AAPASERLGA RGTVRIDGPQ
VPLIYAVLRR PLAALREMTG W
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