| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3685 |
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| Symbol | |
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| ID | 6160458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4121204 |
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| End bp | 4122097 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666458 |
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| Product | shikimate dehydrogenase substrate binding subunit |
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| Protein accession | YP_001792704 |
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| Protein GI | 171060355 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACATCT CCGGCACCAC CCGTGTTTTC CTCATCCTCG GCGACCCCGT GGCCCAGGTG
CGTGCGCCCG AGGTCTTCAA CGCGCTGTTC GCGCAGCACG GCGTCGACGC GGTGCTGGTG
CCGGTGCACG TCGCCAGCGC CGACGTGGCC GCCTTCGTGC GCAGCAGCTT CAAGGCCCGC
AACATCGACG GCCTGTGGGT AACGATCCCG CACAAGACCA CGCTCGCGGG CGTGCTCGAC
CATTGCGACC TCAGCGGCAG CACCGCCGAG GCGGTCAACG CGGTGCGGCG CAATGCCGAC
GGCAGCGTCG AAGGCGCGCT GTTCGACGGC ATCGGCTTCG CCAAGTCGCT CGACCATTTC
GGCATCGCCT GCCGCGGCGC GCGGGTGCTG ATCGTCGGCG CGGGCGGTGC GGGCGTGGCG
ATCGCCACCG CGCTGGTGCA GCGAGCGCTG GCCGAACTGG CGATCTTCGA CACCGACCCG
GCGCGCAGCA CCGCTGCCGC CGAGCGCCTG CGCAGCGTCA GCGGCGTGCC GATCAGCACG
CCGCACAGCG CCGACCCGGC CGGCCACGAC ATCGTCATCA ACGCCACGCC GCTGGGCCTC
GACGACAGCG ACCCGCTGCC CTTCGACGTG CGGCGCCTCG ACGGCAACGC CGCGGTGCTC
GACATCCTGA TGAAGAACCA GCCCACGCCG CTGCTGCGCG CCTGCGCGGC GCGCGGCATC
ACCGCGCACC CGGGCTACGA AATGATGATC CAGCAGGTGC CCGAGTACCT GCGCTTCTTC
GGCCTCGACG AACTGGCGCG CACGGTGCAG GCCGACCTCG CGCCGGTGCG CGCCCTGATG
AGCGACGGCG ACGAAAAGAT CGCCACCCCG ACGCCCCTCG CGAACGCGGC CTGA
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| Protein sequence | MHISGTTRVF LILGDPVAQV RAPEVFNALF AQHGVDAVLV PVHVASADVA AFVRSSFKAR
NIDGLWVTIP HKTTLAGVLD HCDLSGSTAE AVNAVRRNAD GSVEGALFDG IGFAKSLDHF
GIACRGARVL IVGAGGAGVA IATALVQRAL AELAIFDTDP ARSTAAAERL RSVSGVPIST
PHSADPAGHD IVINATPLGL DDSDPLPFDV RRLDGNAAVL DILMKNQPTP LLRACAARGI
TAHPGYEMMI QQVPEYLRFF GLDELARTVQ ADLAPVRALM SDGDEKIATP TPLANAA
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