Gene Lcho_3673 details

Gene Information

• Locus tag: Lcho_3673
• ID: 6160421
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4107505
• End bp: 4108041
• Gene Length: 537 bp
• Protein Length: 178 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641666446
• Product: hypothetical protein
• Protein accession: YP_001792692
• Protein GI: 171060343
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 55
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGCACGAAC CCCTACCCCC TGACCTCGCG CCCGCCGTCG CGCCGGTCGA ACACGGCGCC 
TACGGCCGCG CGCTGAGGGC GTGCGCACGG GTGCTGGCGC TGGCCGGCGG ACTGGTCTTC 
ATCGCCCTGG TCGGCATGTC GATCGTCTCG ATCGTCGGCC GCAAGATCGC CTCGGCACCG 
GTGCCCGGCG ACGTCGAGCT GCTGCAGATG TGCGCCGCGT TCGCGTCGGC GAGCTTCTTC 
GCCTGGTGTC ACCTGAACCA CGGCGACGTG CGGGTCGACT TCTTCACCCA GCACCTGCGC 
GAGATCACGG TGCGCCGGAT GGACGGCGTG GGCTCGGTGC TGGTCGGCCT GTTCGGCGCG 
CTGATCGCCT GGCGCAGCTT CGCCGGTGCG ATGAACCTGC GCGAGTTCGA GGAGACCTCG 
CCGATCCTCG GCCTGCCGCT GTGGATCGCC CAGGTGCTGA TGGTGCCGGG CTTCGTGGTG 
CTCGCCCTGG CGGGCTTCTA CATGGCCTCG CGGCTGTTGC GTGGAGAGAA GGCATGA 

 

Protein sequence

MHEPLPPDLA PAVAPVEHGA YGRALRACAR VLALAGGLVF IALVGMSIVS IVGRKIASAP 
VPGDVELLQM CAAFASASFF AWCHLNHGDV RVDFFTQHLR EITVRRMDGV GSVLVGLFGA 
LIAWRSFAGA MNLREFEETS PILGLPLWIA QVLMVPGFVV LALAGFYMAS RLLRGEKA