Gene Lcho_3668 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3668 
Symbol 
ID6160318 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4100956 
End bp4103466 
Gene Length2511 bp 
Protein Length836 aa 
Translation table11 
GC content73% 
IMG OID641666441 
Productfibronectin type III domain-containing protein 
Protein accessionYP_001792687 
Protein GI171060338 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACCA TGTTCAACCG CAAACTTTCC GTGGCACTGG TGGCCGGCGC GCTGGAGCTG 
TACGCCGCCT CGGTCGCCCA CGCCGCCTGC CCGGTGCCCA ACGGCGCCAC GCCCTACGCC
ACCGGCCCGC TGAACCCGGT CGACGGCTAC GCCGAATACG TCAGCGACAG CCGCGGCACC
TCGCTGCAGA TCTGCCGCAA CGCCGACCTG TGCTTCTTCG ACGAGCCGGT GCCCGGCAAC
CTGGTGTCGG CACAGACCGG CACCGGCGGC GAGTCGTTCT ACTGGCTGGC CGAAGCCTCG
GTGGCCGATG CCACCGCCGG TTTCGAGGCC CTGCTGGTGA TGGCCGCCGA GGCTACCTAC
GCCACCGCCG AGCCGACCGC CGGCGAGCAG CTCACCTTCA CGCGCTTTCG CCTGCGCCTG
GACGTGCCGC AGCCCGGCGT GTATCAGGTC GAGCACCCGT ACGGCGTCGA CAGCTACCGC
ATCGAGGCCC TGGAAACCGG CCGCGACCTG AGCGAGACCT TCGACATCAG CTTCGTGCCC
GACCAGCCCG ACGCACGCGG CAAGGTCGGC CCCTGGCTGA CCTGGGATCC GGTGCTGGCA
CCGCCGCCAC CAGCCGGCTA CATCGGTGAC GGCGCCACGC CGCAGCCGGT GGTGGGCAGC
CCCTGCGACA CCAACTTCGT GCGCATCACC GCGACCGACT TCAACGGCCT GCCGATCGTC
ATCAACGCCA ACGGCAGCAA CGTCATCCGC ACCGACCTGT TCGTGGTGCA GGGCCAGCTG
TTCGACGGCC GGGTGCAGAC CCCGCTGGAC GCCGACCGCG TGACCTACAG CCGCACGCCC
GAGCGGGTCG GCCAGGTCGA CGCCTTCGCC ACCTCGGCGG CCACGGCCGC CGTGACGATC
CAGGACAGCG CCGGCACGCC GGCCGCGTCG GCCCGCCTGG CCACGCCGAC GCCGCTGACC
GCCGACGGCA ACGGCAAGTT CTTCACCAGC GAGGTGCTGG CCGACGCACC CGACACCACC
GCCCTGCCCG GCGCGATCGA CGTCAATGCG CTGGTCGCCG ACGGCAACAC CGACGCCACC
CGGCTGGTGC GCGCGCTGGT CGACCAGGTC ACCATCACCC AGGCCGACTA CGACCTGTCG
ACCGGCCTGC TCAACATCGC CGCCAGCTCC AGCGACACCC GCGTGCCGCC GACGCTGACG
GTGCAGGAAT ACCTGCGCCC GGTCGGCGCG CCGATCGCCA CGGTGGCGCC GCCCTCGCAC
GTCACCGTGA TGTCGTCGGC CGGCGGCTGG GACCGCGTGC CGGTGCGCAC GCTGGCCGCA
CTCGACCAGT CAGAACCCCC GGCCGCGCCG GGCGCCATCG GTGCGGTGGC CGACTCGCCG
ACCCAGGTCA CGCTCGGCTG GAGCGACAAC GCCGACAACG AGGGCGGTTT CGAGATCCTG
CGCAACGGCG TGCTGATCGC CACCACCGCG GCCGACGCGA CCTCGTTCGT CGACACCGCC
GCGCCGCAGG ACAGCACGCT GACCTACCAG GTCGTGGCCG TCAACGCCGG CGGCCGCAGC
GCCGCGGCCA CCATCACGGT GAGCACCCCG GTGCTGCTGA TCGCACCGAG CGCGCTGGCC
ACCACCGCCG TCACCGGCAA CAGCGTCGCG CTGCGCTGGA CCGACAACGC CGCCAACGAG
GCCGGCTACC TGGTGCTGCG CAACGGCCTG GTGATCGCCA CGCTGGCGGC CAACACGGCG
GTCTACACCG ACACCACCGT GGCGCCGAGC ACGGCCTACA CCTACCAGGT GCAGGCCACC
CACGCGCGCG CCCCGGCGGC CGGCTCGAAC GTCATCACCG TGACCACGCC GGCGCTGATC
AGCATCGTCG CGCCGGCCAA CCTGAGCGCC GTGCTCGGCA CGGTGGCCAA CAGCGCCCGG
CTGAACTGGA CCGACGCGTC GACCGGCGAA ACCGGCTACC GCGTGCAGCG CGCCACGATC
ACCATCGCGG CCAACGGCAC CGCCACCACG GGCGCCTTCG CGACGATCAC CACGCCCAGC
GGCAACCTGC CCGCCAACGC CACCACGGTG CAGAACACCG GCCTGGCCGC CAACGCGCTG
TACGCCTACC GGGTCAACGC CGTGAACGGC GCCACCCAGG GCCCGACCAC GCAGGTCGTC
CGCCACAACG GCACCCTGCC GGTGCCGGCC GGGCTGCGCA GCAACGTCAC CAACGGCCTG
CTGGGCGTCG GTGCCACGCC GGTGGGCCGG GTGCCGCTGA GCTGGACCGC CAGCACCGTG
GCGGCCGTGG CCGGCTACGA GCTCGAGCGC TGCGTCGGCG CGCTGACCGT CTGCAATGCA
GCCGGCGCCA CCTGGATCCC GGTGACACGC CTGAACGGCC GCGCCACCCG CACGTTCAAC
GTCGACGGCC TGCCCTCGCG CCAGGCCCAG TCGTTCCGCA TCCGCAGCCA CACCGGCACG
GTCGGGCTGA CCGGCGCCTG GTCGGCCGCG GTGGTCGGCA CGCCGCGCTG A
 
Protein sequence
MTTMFNRKLS VALVAGALEL YAASVAHAAC PVPNGATPYA TGPLNPVDGY AEYVSDSRGT 
SLQICRNADL CFFDEPVPGN LVSAQTGTGG ESFYWLAEAS VADATAGFEA LLVMAAEATY
ATAEPTAGEQ LTFTRFRLRL DVPQPGVYQV EHPYGVDSYR IEALETGRDL SETFDISFVP
DQPDARGKVG PWLTWDPVLA PPPPAGYIGD GATPQPVVGS PCDTNFVRIT ATDFNGLPIV
INANGSNVIR TDLFVVQGQL FDGRVQTPLD ADRVTYSRTP ERVGQVDAFA TSAATAAVTI
QDSAGTPAAS ARLATPTPLT ADGNGKFFTS EVLADAPDTT ALPGAIDVNA LVADGNTDAT
RLVRALVDQV TITQADYDLS TGLLNIAASS SDTRVPPTLT VQEYLRPVGA PIATVAPPSH
VTVMSSAGGW DRVPVRTLAA LDQSEPPAAP GAIGAVADSP TQVTLGWSDN ADNEGGFEIL
RNGVLIATTA ADATSFVDTA APQDSTLTYQ VVAVNAGGRS AAATITVSTP VLLIAPSALA
TTAVTGNSVA LRWTDNAANE AGYLVLRNGL VIATLAANTA VYTDTTVAPS TAYTYQVQAT
HARAPAAGSN VITVTTPALI SIVAPANLSA VLGTVANSAR LNWTDASTGE TGYRVQRATI
TIAANGTATT GAFATITTPS GNLPANATTV QNTGLAANAL YAYRVNAVNG ATQGPTTQVV
RHNGTLPVPA GLRSNVTNGL LGVGATPVGR VPLSWTASTV AAVAGYELER CVGALTVCNA
AGATWIPVTR LNGRATRTFN VDGLPSRQAQ SFRIRSHTGT VGLTGAWSAA VVGTPR