Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3668 |
Symbol | |
ID | 6160318 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4100956 |
End bp | 4103466 |
Gene Length | 2511 bp |
Protein Length | 836 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641666441 |
Product | fibronectin type III domain-containing protein |
Protein accession | YP_001792687 |
Protein GI | 171060338 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACCA TGTTCAACCG CAAACTTTCC GTGGCACTGG TGGCCGGCGC GCTGGAGCTG TACGCCGCCT CGGTCGCCCA CGCCGCCTGC CCGGTGCCCA ACGGCGCCAC GCCCTACGCC ACCGGCCCGC TGAACCCGGT CGACGGCTAC GCCGAATACG TCAGCGACAG CCGCGGCACC TCGCTGCAGA TCTGCCGCAA CGCCGACCTG TGCTTCTTCG ACGAGCCGGT GCCCGGCAAC CTGGTGTCGG CACAGACCGG CACCGGCGGC GAGTCGTTCT ACTGGCTGGC CGAAGCCTCG GTGGCCGATG CCACCGCCGG TTTCGAGGCC CTGCTGGTGA TGGCCGCCGA GGCTACCTAC GCCACCGCCG AGCCGACCGC CGGCGAGCAG CTCACCTTCA CGCGCTTTCG CCTGCGCCTG GACGTGCCGC AGCCCGGCGT GTATCAGGTC GAGCACCCGT ACGGCGTCGA CAGCTACCGC ATCGAGGCCC TGGAAACCGG CCGCGACCTG AGCGAGACCT TCGACATCAG CTTCGTGCCC GACCAGCCCG ACGCACGCGG CAAGGTCGGC CCCTGGCTGA CCTGGGATCC GGTGCTGGCA CCGCCGCCAC CAGCCGGCTA CATCGGTGAC GGCGCCACGC CGCAGCCGGT GGTGGGCAGC CCCTGCGACA CCAACTTCGT GCGCATCACC GCGACCGACT TCAACGGCCT GCCGATCGTC ATCAACGCCA ACGGCAGCAA CGTCATCCGC ACCGACCTGT TCGTGGTGCA GGGCCAGCTG TTCGACGGCC GGGTGCAGAC CCCGCTGGAC GCCGACCGCG TGACCTACAG CCGCACGCCC GAGCGGGTCG GCCAGGTCGA CGCCTTCGCC ACCTCGGCGG CCACGGCCGC CGTGACGATC CAGGACAGCG CCGGCACGCC GGCCGCGTCG GCCCGCCTGG CCACGCCGAC GCCGCTGACC GCCGACGGCA ACGGCAAGTT CTTCACCAGC GAGGTGCTGG CCGACGCACC CGACACCACC GCCCTGCCCG GCGCGATCGA CGTCAATGCG CTGGTCGCCG ACGGCAACAC CGACGCCACC CGGCTGGTGC GCGCGCTGGT CGACCAGGTC ACCATCACCC AGGCCGACTA CGACCTGTCG ACCGGCCTGC TCAACATCGC CGCCAGCTCC AGCGACACCC GCGTGCCGCC GACGCTGACG GTGCAGGAAT ACCTGCGCCC GGTCGGCGCG CCGATCGCCA CGGTGGCGCC GCCCTCGCAC GTCACCGTGA TGTCGTCGGC CGGCGGCTGG GACCGCGTGC CGGTGCGCAC GCTGGCCGCA CTCGACCAGT CAGAACCCCC GGCCGCGCCG GGCGCCATCG GTGCGGTGGC CGACTCGCCG ACCCAGGTCA CGCTCGGCTG GAGCGACAAC GCCGACAACG AGGGCGGTTT CGAGATCCTG CGCAACGGCG TGCTGATCGC CACCACCGCG GCCGACGCGA CCTCGTTCGT CGACACCGCC GCGCCGCAGG ACAGCACGCT GACCTACCAG GTCGTGGCCG TCAACGCCGG CGGCCGCAGC GCCGCGGCCA CCATCACGGT GAGCACCCCG GTGCTGCTGA TCGCACCGAG CGCGCTGGCC ACCACCGCCG TCACCGGCAA CAGCGTCGCG CTGCGCTGGA CCGACAACGC CGCCAACGAG GCCGGCTACC TGGTGCTGCG CAACGGCCTG GTGATCGCCA CGCTGGCGGC CAACACGGCG GTCTACACCG ACACCACCGT GGCGCCGAGC ACGGCCTACA CCTACCAGGT GCAGGCCACC CACGCGCGCG CCCCGGCGGC CGGCTCGAAC GTCATCACCG TGACCACGCC GGCGCTGATC AGCATCGTCG CGCCGGCCAA CCTGAGCGCC GTGCTCGGCA CGGTGGCCAA CAGCGCCCGG CTGAACTGGA CCGACGCGTC GACCGGCGAA ACCGGCTACC GCGTGCAGCG CGCCACGATC ACCATCGCGG CCAACGGCAC CGCCACCACG GGCGCCTTCG CGACGATCAC CACGCCCAGC GGCAACCTGC CCGCCAACGC CACCACGGTG CAGAACACCG GCCTGGCCGC CAACGCGCTG TACGCCTACC GGGTCAACGC CGTGAACGGC GCCACCCAGG GCCCGACCAC GCAGGTCGTC CGCCACAACG GCACCCTGCC GGTGCCGGCC GGGCTGCGCA GCAACGTCAC CAACGGCCTG CTGGGCGTCG GTGCCACGCC GGTGGGCCGG GTGCCGCTGA GCTGGACCGC CAGCACCGTG GCGGCCGTGG CCGGCTACGA GCTCGAGCGC TGCGTCGGCG CGCTGACCGT CTGCAATGCA GCCGGCGCCA CCTGGATCCC GGTGACACGC CTGAACGGCC GCGCCACCCG CACGTTCAAC GTCGACGGCC TGCCCTCGCG CCAGGCCCAG TCGTTCCGCA TCCGCAGCCA CACCGGCACG GTCGGGCTGA CCGGCGCCTG GTCGGCCGCG GTGGTCGGCA CGCCGCGCTG A
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Protein sequence | MTTMFNRKLS VALVAGALEL YAASVAHAAC PVPNGATPYA TGPLNPVDGY AEYVSDSRGT SLQICRNADL CFFDEPVPGN LVSAQTGTGG ESFYWLAEAS VADATAGFEA LLVMAAEATY ATAEPTAGEQ LTFTRFRLRL DVPQPGVYQV EHPYGVDSYR IEALETGRDL SETFDISFVP DQPDARGKVG PWLTWDPVLA PPPPAGYIGD GATPQPVVGS PCDTNFVRIT ATDFNGLPIV INANGSNVIR TDLFVVQGQL FDGRVQTPLD ADRVTYSRTP ERVGQVDAFA TSAATAAVTI QDSAGTPAAS ARLATPTPLT ADGNGKFFTS EVLADAPDTT ALPGAIDVNA LVADGNTDAT RLVRALVDQV TITQADYDLS TGLLNIAASS SDTRVPPTLT VQEYLRPVGA PIATVAPPSH VTVMSSAGGW DRVPVRTLAA LDQSEPPAAP GAIGAVADSP TQVTLGWSDN ADNEGGFEIL RNGVLIATTA ADATSFVDTA APQDSTLTYQ VVAVNAGGRS AAATITVSTP VLLIAPSALA TTAVTGNSVA LRWTDNAANE AGYLVLRNGL VIATLAANTA VYTDTTVAPS TAYTYQVQAT HARAPAAGSN VITVTTPALI SIVAPANLSA VLGTVANSAR LNWTDASTGE TGYRVQRATI TIAANGTATT GAFATITTPS GNLPANATTV QNTGLAANAL YAYRVNAVNG ATQGPTTQVV RHNGTLPVPA GLRSNVTNGL LGVGATPVGR VPLSWTASTV AAVAGYELER CVGALTVCNA AGATWIPVTR LNGRATRTFN VDGLPSRQAQ SFRIRSHTGT VGLTGAWSAA VVGTPR
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