| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3616 |
|---|
| Symbol | |
|---|
| ID | 6163295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4037742 |
|---|
| End bp | 4039322 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641666389 |
|---|
| Product | Ppx/GppA phosphatase |
|---|
| Protein accession | YP_001792635 |
|---|
| Protein GI | 171060286 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0248] Exopolyphosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0000501756 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGG CCGACGAACT GGACGTGCTC GGCGAGCACG CCGAACACCG CATCGACGAT
GTGCCGCTGC TGCTGCCGTC GTCGCACGGC GTGCACTGGC GTGGCGTGCT GGGCGCGATC
GACATCGGTT CCAACAGTTT CCGCCTCGAG CTGGCGCAGA TCCGCGACGG CGAGTACCGG
CGCATCGCCT ACCTGAAGGA AACCGTGCGC CTGGGCGCCG GCCTCGATGC CGACGGCCGC
CTCGACCGCG CCGCCGCCGA GCGTGGCCTG GCCTGCCTGG CGCGCTTTCG CCAGCGCCTG
GGCGGCCTGC CGACCGGCCA GCTGCGCGCG GTGGCGACGC AGACGCTGCG CGAGGCGAAC
AACCGCGACA CCTTCCTGTT CCAGGCCGAG CACGTGCTCG GTTATCCGAT CGAGGTGATC
TCCGGGCGCG AGGAGGCGCG GCTGATCTAC GCCGGCGTGT CGCGCCTGGA GCCCGGCAAT
CACGCGCGGC TGGTGGTCGA CATCGGCGGG CGCTCGACCG AGCTGATCCT CGGCGAAGGC
CGCACGCCGA AGATCGCCGA GTCGTTCCAG ATCGGCAGCG TCAGCCTGTC GGCGCGCTAT
TTCGGCGACG GCCGCTGCAC CGAGCAGGCC TTTCGCCGGG CCCAGATCGC CGCCGAGGCG
CAGCTCGAAG AGGCGCTGCA GGCCTTCGGA CGCGAGCGCT GGGTCGAGGT GCTGGGTTCG
TCGGGCACGG CCGGCGCGGT CAGCCAGCTG CTGCAGGCCA ATGGCCGCAG CGACGGCACC
ATCACGCCCG ACGGCCTGCG CTGGTGCATG CGCCAGTGCA TCGCCGCCGG CTCGGTCGAG
GCGCTGACCC TGCCCGGCCT GCGCGACGAG CGTCGCGCGG TGCTGGCCGG CGGGCTGGCG
ATCCTGGCCG CGCTGCTCAA TCAGTTCGGC ATCGCCGAGC TGCGGCCGAC CCGCGCCGCC
TTGCGCCAGG GCGTGATCTT CGACCTGGCA CAGCGCATCC AGGCGCGGCG CGAGCCCGAC
GGCCACGGCT GGCGCGACGA GACCGTGGCC GAGCTGCAGC GCCGCTTCCA GGTCGACCTG
CTGCAGGCGC AGCGGGTGCA GACGCTGACG CTGGCGCTGT TCGACCAGAT GGTGCGCACG
CCTGACGCAG AGGCGCGCCA GGAGCTTGCC TGGGCCGCCG CGCTGCACGA GATCGGCATG
AGCGTGTCGC ACCACGACCA CCACCGCCAC AGCGCCTACC TGCTGGCGCA CATCGACGCG
CCGGGGTTTT CGCAGAGCCA GCAGCGCCGC CTGGCCGACC TGGTGCTGGG CCAGCGCGGC
GGCCTGCGCA AGATCGAGGC CATGCTGGCC GATCCGAAAC GGGTCGCGCA GGTGCTCGCG
CTGCGGCTGT CGGTGCTGTT CTTCCATGCC CGCTGCGATC TGCTGCAGTC GGTGCCCGAG
CTCGGCCTGG TCGCCGGCAC CGCCACCCTG GTGCTCGACC CCACCTGGGC CCGCGACAAC
CCGCGCTGCA TGCACCTGCT GCGCGAGGAG GCCGCGGCCT GGGCCCGGGT CGGCGACCTG
ACGCTGCAGC TGGCGTCCTG A
|
|---|
| Protein sequence | MTAADELDVL GEHAEHRIDD VPLLLPSSHG VHWRGVLGAI DIGSNSFRLE LAQIRDGEYR
RIAYLKETVR LGAGLDADGR LDRAAAERGL ACLARFRQRL GGLPTGQLRA VATQTLREAN
NRDTFLFQAE HVLGYPIEVI SGREEARLIY AGVSRLEPGN HARLVVDIGG RSTELILGEG
RTPKIAESFQ IGSVSLSARY FGDGRCTEQA FRRAQIAAEA QLEEALQAFG RERWVEVLGS
SGTAGAVSQL LQANGRSDGT ITPDGLRWCM RQCIAAGSVE ALTLPGLRDE RRAVLAGGLA
ILAALLNQFG IAELRPTRAA LRQGVIFDLA QRIQARREPD GHGWRDETVA ELQRRFQVDL
LQAQRVQTLT LALFDQMVRT PDAEARQELA WAAALHEIGM SVSHHDHHRH SAYLLAHIDA
PGFSQSQQRR LADLVLGQRG GLRKIEAMLA DPKRVAQVLA LRLSVLFFHA RCDLLQSVPE
LGLVAGTATL VLDPTWARDN PRCMHLLREE AAAWARVGDL TLQLAS
|
|---|
| |