| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3613 |
|---|
| Symbol | |
|---|
| ID | 6161774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4036077 |
|---|
| End bp | 4037018 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641666386 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001792632 |
|---|
| Protein GI | 171060283 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00145528 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTGA TCGAGCATCG GCGCATGGTG CCCCTGCTCG TCACTCGTTT TCTCGATCCG
CTGCCGCGGG TCTGCGCGCG GCTCGGCCTG CTGGCCTTGC TGGCGATGCT GTGCGCGTGT
TCGCCGCGTC ATCTGATCGT GCAGGGCATG GCCGACGGAC TGGCCGGCCA GGGCCAGGTG
GTCGAAGACG ATCTGCAACT GGCGCGCGAG GCCGCCGCCT TCCACCTCAA GCTGTCCGAA
TCGGTGCTGC GCCAGACCCC CGGCCACCTG CCGCTTGCCG AGTCGGTGGC GGCCGGCTTC
ACGCAATACG CCTACGCCTT CGTCGCCTTC GACGCCGAGC GCATCGAGGC CCGCGATGCC
AAGGCGGCCC AGAAGCTGCG CGAGCGCGCG GCCCGGCTCT ACCGGCGCGC GTACCGCCAC
GCCATGGCCG CGCTGTCACA CCGCTCACCG GGTTTCGCCC AGGCGCTGGC GAGTGCCGAT
GCCTCGAAAT GGCCGCGCCT GGCCGATGAC GAGATCGGCC TCGCGTACTG GGCGGCGGCC
TCGTGGGGCG GCGCCATCTC GCTGTCGAAA GACGATCCCG ACGCGGTCGC CGACCTGCCG
CTGGCGATCC GCCTGGCCAC GCTGGCGTGG CAGAAAGCGC CCGATCACGG CGACGGCGCA
CTGGCCAGCC TGATGGGCAG CTTCGAGGCC GCGCGCCCGG GTGGCTCGCG CCAGCAGGCG
GCGGCCTACT TCGATCGCGC GATCGCACTC GGCGCAGGCC TGCGCGCCGG TCCTTTCGTG
GCCAAGGCCG AGGGTATCGC GCTGCCGGCG GCCGATCGGC CCGCCTTCGA AGCCCTGCTG
CGCCAGGCGC TGGCGGCCAG CGCCGCACGG CGCGATCTGC AGAACGAGGT GATGCGCGAA
CGCGCGCAAT GGCTGCTCGA TTCGGCCGAC GACCTTTTCT GA
|
|---|
| Protein sequence | MRVIEHRRMV PLLVTRFLDP LPRVCARLGL LALLAMLCAC SPRHLIVQGM ADGLAGQGQV
VEDDLQLARE AAAFHLKLSE SVLRQTPGHL PLAESVAAGF TQYAYAFVAF DAERIEARDA
KAAQKLRERA ARLYRRAYRH AMAALSHRSP GFAQALASAD ASKWPRLADD EIGLAYWAAA
SWGGAISLSK DDPDAVADLP LAIRLATLAW QKAPDHGDGA LASLMGSFEA ARPGGSRQQA
AAYFDRAIAL GAGLRAGPFV AKAEGIALPA ADRPAFEALL RQALAASAAR RDLQNEVMRE
RAQWLLDSAD DLF
|
|---|
| |