| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3596 |
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| Symbol | |
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| ID | 6162589 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4013971 |
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| End bp | 4015752 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666369 |
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| Product | acyl-CoA dehydrogenase domain-containing protein |
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| Protein accession | YP_001792615 |
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| Protein GI | 171060266 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.595481 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGACCT ACCAAGCGCC GCTGCGCGAG ATGCTGTTCA CGATGAAGGA GATCGGCGGG
CTGGACGCGG TCTGCGCCTT GCCTGGCCAT GAGGAGACCA CGCCCGATCT GGTCGAGGCC
ATCCTCGAAG AGGCCGGCAA GTTTGCCGCC GGAGTGCTCG ATCCGATCAA CTACCCGGGC
GATCAGCAGG GCGCCCGCTG GCAGGCCGGC GTGGTCACGG CCGCCGACGG TTTCAGACAG
GCTTACGCCA GCTTCTGCGA GACCGGCTGG AACGCCATGC CCGCACGCAC CGAGTTCGGC
GGCCAGGGCC TGCCCACGCT GGTGTCGACC GCCGTGCTGG AGATGTGGAA GTCGGCCAAC
ATGGCCTTCA GCCTGTGCCA GATGCTCACG CTCGGTGCCG TCGAGGCCAT CGCCCACCAC
GGCAGCGCAG TACTCAAGCA GCGCTTTTTG CCCAAGATGG TGGCCGGCGA GTGGACCGGC
ACCATGAACC TGACCGAACC GCAGGCCGGC TCGGACCTCT CGGCCGTGCG CAGCCGCGCC
GTGCCCGAGG GCGATCACTA CCGCGTCAGC GGCACCAAGA TCTTCATCAC CTGGGGCGAA
CACGACCTGG CCGAGAACAT CGTGCACCTC GTGCTGGCCC GGCTGCCCGA GGCACCCGCC
GGCGTGAAGG GCATCTCGCT GTTCGTCTGC CCGAAGTTCC TGGTCAACGA CGACGGCAGC
CTGGGTGCAC GCAACGACCT GGTGTGCGCG TCGATCGAAC ACAAGCTGGG CATCCACGCC
AGCCCGACCG CCGTGATGAG TTTCGGCGAA GGGCCGGGGG CGATCGGCTA TCTGGTCGGC
GAGCCGCACA AGGGGCTGGG CTACATGTTC ACGATGATGA ACCACGCCCG GCTCAACGTC
GGCCTCGAAG GCGTGGGCAT CTCCGAGCGC GCCTACCAGC ATGCGCGCGC CTATGCGCTC
GACCGCGTGC AGGGCCGCAC CCTCACGGGC AGCAAGACCA TCATCGGCCA CCCCGACGTG
CGCCGCATGC TGCTCGACAT GAAGGCGCGC ACCGAGGCCA TGCGTGCGCT GGCCTACTAC
GCCGCCGGCC AGATGGACCG CGCCCATGCG CACGCCGATG CCGACGCCCG CGCGCGCAGT
CAGGCGCTGG TCGAACTGCT GACGCCGGTG GTCAAGGGCT GGTGCACCGA GAACGCCCTG
GGCATCGCCT CCGACGGCGT GCAGGTGCAT GGCGGCATGG GCTTCGTCGA AGAAACCGGC
GCGGCGCAAT ACCTGCGCGA CGCCCGCATC ACGACGATCT ACGAGGGCAC CACCGGCATC
CAGGCCAACG ACCTGATCGG CCGCAAGCTC GCCCGCGAAG GCGGCGTGAC GATGCGGGCG
CTGATCGCGC AGATGCGCAG CGATGCCGAC CGCATCGGCG ACGGGCCCGA TGCGCAGCTG
GTCGCGCTGG GCCAGCCGCT GCGCGGCGGC CTGCAGGCGC TGGCCGATGC GGTCGACTGG
CTGCTGGCGG TGAGCGCCAG CCAGCCGGCA CAGGCCGCGG CCAGCGCGGT GCCCTTCCTC
CAGCTGACCG GCACGGTGGT CGGCGGCTGG CTGATGGCAC GCAGCGCCGA GGCCGCGGTG
GCCCAACTGA GCGCGGGCAG CGCCGACACC GACTTCCTGT CGGCCAAGGT CGCGACCGTG
CGCCACTACA TGGCGCACGT GATGGCCGAG GCCGGCGGAC TGCGCGACAT CGTCACCGCC
GGCGCAGCCA CCACGCTGGC GCTGGCCGAC CACCAGTTCT GA
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| Protein sequence | MSTYQAPLRE MLFTMKEIGG LDAVCALPGH EETTPDLVEA ILEEAGKFAA GVLDPINYPG
DQQGARWQAG VVTAADGFRQ AYASFCETGW NAMPARTEFG GQGLPTLVST AVLEMWKSAN
MAFSLCQMLT LGAVEAIAHH GSAVLKQRFL PKMVAGEWTG TMNLTEPQAG SDLSAVRSRA
VPEGDHYRVS GTKIFITWGE HDLAENIVHL VLARLPEAPA GVKGISLFVC PKFLVNDDGS
LGARNDLVCA SIEHKLGIHA SPTAVMSFGE GPGAIGYLVG EPHKGLGYMF TMMNHARLNV
GLEGVGISER AYQHARAYAL DRVQGRTLTG SKTIIGHPDV RRMLLDMKAR TEAMRALAYY
AAGQMDRAHA HADADARARS QALVELLTPV VKGWCTENAL GIASDGVQVH GGMGFVEETG
AAQYLRDARI TTIYEGTTGI QANDLIGRKL AREGGVTMRA LIAQMRSDAD RIGDGPDAQL
VALGQPLRGG LQALADAVDW LLAVSASQPA QAAASAVPFL QLTGTVVGGW LMARSAEAAV
AQLSAGSADT DFLSAKVATV RHYMAHVMAE AGGLRDIVTA GAATTLALAD HQF
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