Gene Lcho_3493 details

Gene Information

• Locus tag: Lcho_3493
• ID: 6160008
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 3904867
• End bp: 3906996
• Gene Length: 2130 bp
• Protein Length: 709 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641666265
• Product: hypothetical protein
• Protein accession: YP_001792512
• Protein GI: 171060163

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 13
• Fosmid unclonability p-value: 0.00000901673
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCCCACGT TTGAACATCC GTCCGAGCTC CCCCAAGAGC CTTTTGTGCG CAGCCTCGAT 
GCCATGGGCA ACTGGCGCGC CGAACTCGAA GAGCGGGTGC GCGATCTGGT GCGCTTTCTG 
CGCGAGCACG CGCTGCTCGA CGAATCGGCC AACGACCTGC TCGATTCGCT GCGCCAGCGT 
CTGGCCGGCG AAAAGCTGGT GGTCGCCTTC GTCGCCGAGT TCTCGCGCGG CAAGTCGGAG 
CTGATCAACG CGATCTTCTT CGCCGACGCG GGGCGCCGCA TCATGCCGGC CACGCCGGGC 
CGCACCACGA TGTGCCCGGT CGAGCTGGGC TGGGACGCCG ACGAGTCGCC CGGCCTGTCG 
CTGCTGCCGA TCGACACCCG GCTCGATGGT GCCTCGCTGT CCGAGCTGCG CGGCCAGCCG 
CGCGCCTGGG TGCGTCAGCC GATCGACATC AAGGATCCGG AAGCCTTCGC CCGCGCGCTG 
ACCGCCGTGA TGGGCACGCG CGGCGCCAGC GTCGACGAGG CCCGCGCGCT CGGGTTCTGG 
AACGACGAAC AGCTCGCCGA CAACCCGCCG ATGTCCGACG ACGGGCTGGT CGAGATCCCG 
CTGTGGCGCC ACGCGCTGAT CAACGTGCCG CACCCGCTGC TCAAGCGCGG CCTGGTGGTG 
ATCGACACAC CGGGGCTCAA CGCCATCGGT GCCGAGCCGG AACTCACCGT CGGCCTGCTG 
CCGAGCGCCC ACGTGGTGGT GTTCGTGCTC GGCGCCGACA CCGGCGTCAC CAAGTCCGAC 
CTCGAGATCT GGCGCGACCA CCTGGCCTCG CAGGCGCTGA CGCGCTACGT GGTGCTCAAC 
AAGATCGATG CGCTGTACGA CCCGCTGTCG AGCATCGAGC TCAACGAGGC GCAGATCGCC 
AGGCAGTGTG CGCAGGTCGC CAAGACGCTG GAGATGCCGA GCTCGCGCGT CTTCCCGCTG 
TCGGCCCGCC AGGCGCTCGA GGCGCGGGTC GAGGGCAACG CCCGTCTGCT GGTCGACAGC 
CGCCTGCTGG CGCTCGAGCA GGCGCTGGCG CAGCAGCTGC TGCCGCAGCG CCGCGCGGTG 
TTCGAGCAGC TCACGCTCGA GGCGCTGGCG GTGGTGCAGC AGTCGACCGT TCGCAACCTG 
ACCGACCTGC GCCGCCACCT GGCCGAGCAG CTGTCCGAAC TGCGCGGCCT GCGTGGCAAG 
AACAGCAGCA AGGTGCAGCT GATGCTGCAG CGCGTGAGCG CCGAGACGGT CGAGTTCGAG 
CAGTGCACCA CCCAGCTGCA GGCGCTGCGC GCGGTGCACA CCCGCATGCT CAAGGACCTG 
CTGCAGTGCC TGGCGGGCGA GCCGCTGCGG GTGCAGGTCG AGGGCATGAT CCGCTCGATC 
CGCGAGTCGC TGCTCAAGCT GGGGGCGCGG CGCTCGTTCA CCCAGCTGTT CGCCGATCTG 
CGCAGCATGC TCGACGAGGC GCAGAAACGC GGCCAGGACA TCCGCGACAT GCTGGCCGCC 
TCGTTCACCC GCCTCAACAC CGAGTTCGCC TTCAGCCTGG TGCCGGCGCC GACGCCGGAC 
CTGTCGCGCT TTCGTGACGA CCTGGCGCTG ATCGAGCGCA ACTACATCCA GTACCTCGGC 
CTGACGCAGG CGATGCGGCT GGCGCAGCCG CGGTTCCTCG AGCAGTTCCG CCGCATGCTG 
ATGTCGCGCC TGCGGGTGGT GTTCGAGAGC GCATCCAGCG AGATCGAGCT CTGGAACCGC 
ACCGCCTCGG CGCAGGTCGA CGGCCAGTTG CGCGAGCGCC GGCGCGCCTT CAAGCGCCGC 
CGTGAATCGC TCGAACGCAT CCAGGCGGCT TCGGCCGAAC TCGAGACCCG GCTGGGTGAA 
CTCGAGCAGC AGGACGAGCG GCTGGCCCAC ATCGAGGCCG GCCTGGCCGC GCTGTTCGAG 
GGCGCCCGCC GCTCGGCCAC GCGGCGCGAG TTCCTGCACG TCGGTGGTGA CACGGTCACG 
ACCTCCACCC TGCAGGCGCT TGCGCCCGCT GCCGTGGCAC GGCCGAGCGA GCCGGTGTCG 
ATGCTGGCGC TCAACCAGGC GTTCGTCGGC AGCGCGCCGG CCAGCCCCGG CGACCGGCCC 
GATCTGGGCA CACACGTGAT CCAGGTTTGA 

 

Protein sequence

MPTFEHPSEL PQEPFVRSLD AMGNWRAELE ERVRDLVRFL REHALLDESA NDLLDSLRQR 
LAGEKLVVAF VAEFSRGKSE LINAIFFADA GRRIMPATPG RTTMCPVELG WDADESPGLS 
LLPIDTRLDG ASLSELRGQP RAWVRQPIDI KDPEAFARAL TAVMGTRGAS VDEARALGFW 
NDEQLADNPP MSDDGLVEIP LWRHALINVP HPLLKRGLVV IDTPGLNAIG AEPELTVGLL 
PSAHVVVFVL GADTGVTKSD LEIWRDHLAS QALTRYVVLN KIDALYDPLS SIELNEAQIA 
RQCAQVAKTL EMPSSRVFPL SARQALEARV EGNARLLVDS RLLALEQALA QQLLPQRRAV 
FEQLTLEALA VVQQSTVRNL TDLRRHLAEQ LSELRGLRGK NSSKVQLMLQ RVSAETVEFE 
QCTTQLQALR AVHTRMLKDL LQCLAGEPLR VQVEGMIRSI RESLLKLGAR RSFTQLFADL 
RSMLDEAQKR GQDIRDMLAA SFTRLNTEFA FSLVPAPTPD LSRFRDDLAL IERNYIQYLG 
LTQAMRLAQP RFLEQFRRML MSRLRVVFES ASSEIELWNR TASAQVDGQL RERRRAFKRR 
RESLERIQAA SAELETRLGE LEQQDERLAH IEAGLAALFE GARRSATRRE FLHVGGDTVT 
TSTLQALAPA AVARPSEPVS MLALNQAFVG SAPASPGDRP DLGTHVIQV