| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3465 |
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| Symbol | |
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| ID | 6159782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3874533 |
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| End bp | 3877607 |
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| Gene Length | 3075 bp |
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| Protein Length | 1024 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666240 |
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| Product | hypothetical protein |
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| Protein accession | YP_001792488 |
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| Protein GI | 171060139 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.038235 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGACGCAC AAGCAAAGCC GGTGACCCGC AAACACTGGG TCAGGCTGCT GTCGATCGGC
CTGGTGGCCA CCGCCGTCGG CGCCCTGGTG GCGCTGATTG TCGACGAGGT GCAGACCTCG
CGCCTGCAGG CCCGCCTGAT CAGCCGCCTG AGCGGCGAAC TCAAGCACAC GCTCGAGCTC
GGGCCCAGCG ACGCGATCCG CTACCCCGGC GACGGCCCCT ACGACGCGCG GCTGGGCTAC
CACCAGCTGC CCGGCCTGAT CGAGCGCCTG TCGGCGCAGC AGTTCGACGT CACGGCGCAG
GCCCGCATGT CGGCACGCCA GATCGCGCTG CGCGATCAGG GCCTGTTCAC CATCTACGCC
GAGAAGGACC AGGCCGGGCT GACGCTGCGC GACTGCCGCA ACGCGCCGCT CTACAGCGCG
CGCTACCCGA AGCGGGTCTT CGAGGGCTTC GACGCCGTGC CGCCGCTGCT GGTGGCGTCG
CTGCTGTTCA TCGAGAACCG CGAGCTGCTC GATGCCGACC GGCCGACCCT GAACCCGGCC
GTCGAATGGG CCCGGCTCGG CAAGGCGGTG GGCGAGCAGG CGCTGCGCCT GGTGGGCGAC
GACCACCGCA CACCCGGCGG CAGCACGCTG GCCACGCAGC TCGAGAAATA CCGCCACTCG
CCCGACGGCC GCACCGACTC GGCGGCCGAG AAGCTGCGGC AGATGGCGTC GGCCTCGCTG
CGCGCCTACC TCGACGGCGA GAACACCCTG CCGCGGCGGC GCCAGATCGT CGTCAACTAC
CTCAACACCG TGCCGCTGGC GGCGCGTCCG GGCTTCGGCG AGGTCAACGG CATGGGCGAC
GGCCTGTGGG CCTGGTACGG GCGTGATTTC GACGAAGTCA CCGCACTGCT GAGCCAGGCC
GACGACCCGG CCGGGCCCGG CGCCTTCGAG CAGCGCCAGC GCAAGGCCGC CGCGTTCAAG
CAGGCGCTGT CGCTGATGGT GGCGCAGCGC CGGCCCTCGC ATTACCTGGG CGCGGGCAGC
GACGGCTCGC TGGCCGACCT GACCAACAGC TACCTGCGCG TGATGGCCGA GGCCGGCGTG
ATCCCCGCCG CGCTGCGTGA CGCGGCGCTG GCCGCACCCC TGAAGCGGCT GCCCAATCCG
CCACGCGAGA CGATGGCACC GTTCACCGAA CGCAAGGCCA GCACGGCGCT GCGCAGCCGG
CTGTCGAACC TGCTGGGCGT GCCACGCGCC TACGACCTCG ACCGGCTCGA CCTCAGCGTC
GACAGCACGC TCGACGGCGC GACCCAGCAG GCGCTGACGC GCACCCTGGT CAGCCTGCGC
GAGCCCGAGG CCGCCCGCGC CGCCGGGCTG TACGGCCACC ACCTGCTCAA GCCGGGCGAC
GACCCGAGCA AGCTGCAGTT CAGCTTCACG CTCTACGAGC GCGGCGAACG CGCCAACCTG
CTGCGCGCGC AGACCGACAA CGTCGACCAG CCCTTCGACA TCAACGAAGG CGCCCGCCTC
GACCTCGGCT CGACCGCCAA GCTGCGCACG CTGGTCAGCT ACCTCGAACT GGTGGCGCAG
CTGCACGAAC GCTGGAGCGG GCTCGACCGC ACGGCGCTGC TGGCGCTGAA GCCGGTCGAC
AACGACAACC TGGCGCGCTG GGCCCGCAAC CACCTGCTGG GCGCCGCCGA CAAGAGCCTG
CCGGCGATGC TCGAGGCGGC CATGCTGCGC ACCTATTCGG CCGACCCCGG CGAAAGCTTC
TTCACCGGCG GTGGCGTGCA CACCTTCGTC AACTTCGACC CGGAGGACAA CTTCCGGGTG
CTCACGGTGC GCGAATCGTT CCGCCGCTCG GTCAACCTGC CGTTCATCCG GATCATGCGC
GACGTGGTGC GCCACGTGCT GGCGCAGTCG CCCGGCGCCG CCTTGCTGAG CAACCCCGCC
GATCCGGCCC GGCGCGAATA CCTGGCGCGT TTTGCCGACC GCGAGGGCAG CCAGTTCCTG
ACCTCGTTCC ACACCAAGTA CCGCGGCCTG ACCCGCGAGC AGGCCGAAGA CCTGCTGCTG
CGCGACCTGC GCGCCACGCC GCCGCGACTG GCGGCCGTGT TCGGCGTGCT CGAGCCGACG
TCCGGGGTCG ACGCGCTGGG GGCCTTCCTG GCCCGGCGCC TGCCCGGCAC CCGGCTCACG
CCGGCGGCGG TGCAGTCGCT GCTCGACAAG TACGGGGCGC AGAACATGAG CCTGGAGGAC
CAGGGCTACG TGGCCGGCAT CCACCCGCTC GAGCTCTGGC TGGTCGGCCA CCTGCGCCAG
AACCCCGGCG CGCGCCTGCC GGCCGTGCTG GCCGCCAGCA AGGACGAGCG CCAGCGGGTC
TACGGCTGGA TCTTCCGCAC CCGCCACAAG CAGGCGCAGG ACGTGCGCAT CCGCCAGCTG
CTCGAGTTCG AGGCCTTCGC CACGATCCAG CGCAGCTGGC AGCGCCTGGG CTATCCGTTC
GGATCGCTCA CGCCGTCGTA CGCCACCGCG CTCGGCGCCT CGGGCGACCG GCCGGCGGCG
CTGGCCGAGC TGATGGGCAT CATCGTCAAC CAGGGCATGC GGCTGCCGGC CTCGCGCATC
GAGTCGCTCG CCTTCGCCAC CGACACGCCC TATGAAACCC ACCTGACGCG CCGGGCCGGT
GCCGGCGAGC GGGTGCTGCC CGCCGAAGTC ACGCTGACCG TGCGGCGCGC CCTCACCGAC
GTGGTCGCCA GCGGCACCGC CGGGCGGCTG CGCGGCTCGC TGGTGCGCAG CGACGGCAGC
GCGGTCGAGA TCGGCGGCAA GACCGGCACC GGCGACCACC GCTACGACGT CTACGGCCCG
CGCGGGCAGC TGATCTCGAC CCGGGTGGTC AACCGCACGG CGACCTTCGT GTTCCTGATC
GGCGAGCGCT ATTTCGGCAC CGTGATGGTC TACGCCCACG CGCCCCATGC CGAGAAGTAC
AAGTTCACCA GCGCGCTGCC CACGCAGCTG CTGAAGTCGC TGGTGCCGAT GCTCAAGCCG
CTGGTCGACA ACGACGCCTG CAGCGCGGCG GCCGACGACG CCACCCAGCG CGCCAGCGCG
GGGGTCGGCC GCTGA
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| Protein sequence | MDAQAKPVTR KHWVRLLSIG LVATAVGALV ALIVDEVQTS RLQARLISRL SGELKHTLEL
GPSDAIRYPG DGPYDARLGY HQLPGLIERL SAQQFDVTAQ ARMSARQIAL RDQGLFTIYA
EKDQAGLTLR DCRNAPLYSA RYPKRVFEGF DAVPPLLVAS LLFIENRELL DADRPTLNPA
VEWARLGKAV GEQALRLVGD DHRTPGGSTL ATQLEKYRHS PDGRTDSAAE KLRQMASASL
RAYLDGENTL PRRRQIVVNY LNTVPLAARP GFGEVNGMGD GLWAWYGRDF DEVTALLSQA
DDPAGPGAFE QRQRKAAAFK QALSLMVAQR RPSHYLGAGS DGSLADLTNS YLRVMAEAGV
IPAALRDAAL AAPLKRLPNP PRETMAPFTE RKASTALRSR LSNLLGVPRA YDLDRLDLSV
DSTLDGATQQ ALTRTLVSLR EPEAARAAGL YGHHLLKPGD DPSKLQFSFT LYERGERANL
LRAQTDNVDQ PFDINEGARL DLGSTAKLRT LVSYLELVAQ LHERWSGLDR TALLALKPVD
NDNLARWARN HLLGAADKSL PAMLEAAMLR TYSADPGESF FTGGGVHTFV NFDPEDNFRV
LTVRESFRRS VNLPFIRIMR DVVRHVLAQS PGAALLSNPA DPARREYLAR FADREGSQFL
TSFHTKYRGL TREQAEDLLL RDLRATPPRL AAVFGVLEPT SGVDALGAFL ARRLPGTRLT
PAAVQSLLDK YGAQNMSLED QGYVAGIHPL ELWLVGHLRQ NPGARLPAVL AASKDERQRV
YGWIFRTRHK QAQDVRIRQL LEFEAFATIQ RSWQRLGYPF GSLTPSYATA LGASGDRPAA
LAELMGIIVN QGMRLPASRI ESLAFATDTP YETHLTRRAG AGERVLPAEV TLTVRRALTD
VVASGTAGRL RGSLVRSDGS AVEIGGKTGT GDHRYDVYGP RGQLISTRVV NRTATFVFLI
GERYFGTVMV YAHAPHAEKY KFTSALPTQL LKSLVPMLKP LVDNDACSAA ADDATQRASA
GVGR
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