| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3425 |
|---|
| Symbol | |
|---|
| ID | 6161878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3808236 |
|---|
| End bp | 3808748 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641666200 |
|---|
| Product | general secretion pathway M protein |
|---|
| Protein accession | YP_001792448 |
|---|
| Protein GI | 171060099 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3149] Type II secretory pathway, component PulM |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0000548407 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCG CCCCCACCCT GCCGCCGGCC CTGCAGCAGG CCCGTGCCCA GCTGGCGCAG
CGCTGGCAGG CGCTGGCGCC GCGCGAGCGC ACCGGCGCCA GCCTGGCGAT CGCCGCGCTG
ACGCTGCTGC TGGTCTGGAG CGTCGCCATC CAGCCGGCCC TCAGGACGCT GCGCACGGTG
CCGGCCCAGC GCGCCGAACT CGATGCGCAA CTGGCCCGGA TGCAGGCGCT GGCACAAGAA
GCGCGTGAGC TGCGCGCGTT GCCGCCGGTC GCGCCCGAAC AATCCGAAAA CGCCTTGCGT
GGCGCCACCA CGCGACTGGG CGCGGGCGCC CGGCTCAACC TGAGCGGCGA TCGCGCCACC
GTCACGCTCA ACGCGGTCGA TCCGGCCGCC CTGACCGCCT GGCTGGCCGA GGTGCGCAGC
GCCGCCCGCG CCCGGGTGGT CGAACTGCAG CTCAACCGCA GCGGCGCGGG CTACAGCGGC
ACCGTGGTGC TGACCCTCGG TCGTCCGAGC TGA
|
|---|
| Protein sequence | MSRAPTLPPA LQQARAQLAQ RWQALAPRER TGASLAIAAL TLLLVWSVAI QPALRTLRTV
PAQRAELDAQ LARMQALAQE ARELRALPPV APEQSENALR GATTRLGAGA RLNLSGDRAT
VTLNAVDPAA LTAWLAEVRS AARARVVELQ LNRSGAGYSG TVVLTLGRPS
|
|---|
| |