Gene Lcho_3407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3407 
Symbol 
ID6162839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3789473 
End bp3790531 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content65% 
IMG OID641666182 
Producttype IV pilus assembly protein PilM 
Protein accessionYP_001792430 
Protein GI171060081 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4972] Tfp pilus assembly protein, ATPase PilM 
TIGRFAM ID[TIGR01175] type IV pilus assembly protein PilM 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0209183 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTCGCA AGCATGCGTC GCTGATCGGA CTGGACATCA GCTCGTCGAG TGTGAAGCTG 
GTCGAGTTGG GTCAAACCGC CACGGGCGAG TACGTGGTCG AGCGCTTCGC CAGCGAGTCG 
TTCGAAAAGG GCTGGATCAC CGACGGTCAG ATCGAGAAGT TCGACGAAGT GGCCGATGCG 
GTGCGCCGCG TGGTCATCAA GAGCGGCACC CGGACCAAGT ACGTGGCGAT GGCGATGCCG 
CAGTCGTCCG TGATCACCAA GAAGATCATC CTCCCGGGCG GCCTGCGTGA AGAGGAGATG 
GAGATCCAGG TCGAGGCCGA GGCCAACCAG TACATCCCGT TTTCGCTCGA CGAAGTGAGC 
CTCGACTTCT GCGTCATCGG CCCGAGCCCG GACGCGGTCG GCGATGTCGA GGTGCTGATC 
GCCGCCTCGC GCAAGGACCG CGTCCAGGAT CGCCAGGGCC TGGCCGAAGC CGCCGGCCTG 
AAGCCGGTGG TGCTCGACAT CGAGTCCAAC GCCTCGCGCC TGGCCATCAG CCGTGTCATC 
GCCTCCCTGC CCAATCAGGG CCGCGACGCG CTGGTCGCCC TGTTCGAGAT CGGCGCCGAC 
ACCACCAGCC TCAAGGTGCT GCGGGACGAC GAGATCCTCT ACGACCGCGA CCAGGCGTTC 
GGCGGTGCCC AGCTGACCCA GCTGATCTCG CGCCAGTACG GCCTGTCGTT CGAGGAAGCC 
GAGATCAAGA AACTGGCCGG CGATCTGCCC GAGGACTACG AGAGCTCGCT GCTGTCGCCG 
TTCGTCGACA GCCTGTCGCA GGAGATCGGC CGTGCCTTGC AGTATTTCTT CACCAGCACC 
CCCCATCACC GCGTGCATTA CGTGATGCTG TCGGGCGGTA CGGCCACCTT GCAGGGGCTC 
AAGGACAGGG TCACCGAGCT GACCGGTTTT GCGTCGATGG TCATCAATCC CTTCGAAGGC 
ATGAAACTCG GCAGCGCGGT GCGCGAGAGC AAGCTGCGGC GTGAGTCGCC GTCCTACCTG 
ACCGCGTGCG GGCTGGCGAT GCGGAGGTTT CTGCAATGA
 
Protein sequence
MGRKHASLIG LDISSSSVKL VELGQTATGE YVVERFASES FEKGWITDGQ IEKFDEVADA 
VRRVVIKSGT RTKYVAMAMP QSSVITKKII LPGGLREEEM EIQVEAEANQ YIPFSLDEVS 
LDFCVIGPSP DAVGDVEVLI AASRKDRVQD RQGLAEAAGL KPVVLDIESN ASRLAISRVI 
ASLPNQGRDA LVALFEIGAD TTSLKVLRDD EILYDRDQAF GGAQLTQLIS RQYGLSFEEA 
EIKKLAGDLP EDYESSLLSP FVDSLSQEIG RALQYFFTST PHHRVHYVML SGGTATLQGL 
KDRVTELTGF ASMVINPFEG MKLGSAVRES KLRRESPSYL TACGLAMRRF LQ