Gene Lcho_3383 details

Gene Information

• Locus tag: Lcho_3383
• ID: 6163367
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3761477
• End bp: 3762154
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641666158
• Product: ThiJ/PfpI domain-containing protein
• Protein accession: YP_001792406
• Protein GI: 171060057
• COG category: [K] Transcription
• COG ID: [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 66
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACCCGA CCCCGACCCG CCTCATCGGC CTGCTGATCT ACGACGGCGT CGAGCTGCTC 
GACCACGCCG GGCCCTACGA GGTCTTCACC ACCGCCAGCC GCATGCACGC GCGGTTGCAC 
GGCGCGGGCC TGCCGCCACC GTTCGAGGTG CTGTCGATCG CCGCCAGCCA GGCGCCGATA 
CGCGCCCGCG CCGGCCTGCA ACTGCTGCCC GACCAGACCA TCGACGCGCA TCCGCCGCTG 
GACCTGCTGA TGATCCCCGG CGGCGTGGTC GATGCACCGC TGGCCGACGC GCGCACGCTG 
GCCTGGGTGG CCGATCAGGC GACGCAGGTG GAAACGGTGG CGTCGGTCTG CACCGGCGTG 
TTCGTGCTCG CCGCCGCAGG CGTGCTGCCC GAGGGCTGCA GCTGCACGAC GCACTGGGAG 
GACATCGACG ACCTGCAGCG GGCGCACCCG ACGCTGAAGA TCCACAGCAG CATGCGCTGG 
GTCAACGCGC AGCTGCCCGC CACCGACGAG GCGCCGCCGC GGCCGCTCTA CACCTCGGCG 
GGCATCTCGG CCGGCATCGA CCTGGCGCTG CACCTGGTGG CGGTGTTCGC CGGTCAGGCG 
CTGGCCGAAC GGACCGCGCG GCAGATGGAT TACCGCTGGA TCAGCACCCC GCACGACGGC 
ACGCCGCACG TGCTGTGA 

 

Protein sequence

MNPTPTRLIG LLIYDGVELL DHAGPYEVFT TASRMHARLH GAGLPPPFEV LSIAASQAPI 
RARAGLQLLP DQTIDAHPPL DLLMIPGGVV DAPLADARTL AWVADQATQV ETVASVCTGV 
FVLAAAGVLP EGCSCTTHWE DIDDLQRAHP TLKIHSSMRW VNAQLPATDE APPRPLYTSA 
GISAGIDLAL HLVAVFAGQA LAERTARQMD YRWISTPHDG TPHVL