| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3366 |
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| Symbol | |
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| ID | 6161035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3741064 |
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| End bp | 3743352 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641666141 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001792389 |
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| Protein GI | 171060040 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATACCG CCACGCTGCT GAGCACCAAC GCGCTGCTTT CGTCCGCCGC GGCACTCGTC
ATGTTCGTGG TCTTGCGCAC ACGCAAGACC TATCCCGGAT TCGGTTTCTG GACCGCCGGT
GTCGCGTGTC TTGCGCTGGG AGCGGCGATG CTCGTGCCCG GGGCCATGCC GCAAGCCTGG
ATCGTGCGGG TGTTGCGCAA TGCCACGCTG CTGGGCGGCC TGCTGCTGCT GCTGCGCGGC
ATGCTGGTTT TCCGCGGCTA TCAGGTCAGC CATCGCTGGG AAGGGCTGTT GGCAGTCATT
TTCTTCGTCG TGTTCGGCTA CTACAGCCTC GACCCCGCCC AGATCGATGC GCGCATCGTC
ATCTATTGCG TCTTGGCCGG CATCCTGAGC ATCACGACAG CCATCGTCAC CCTGCGTGAC
CGACCGCCGT ACTTCGGTTC GAACGATGTC ATGCTGGCAC TCTGGATGCT GGTGTTTGCC
GTCCTGTCCT TCGTGCGCAT CGCCCATCAG CTCAGCCATC CGGATGTCAA CACCGCGTTC
GAAGCCTTGA AAGGCTTTGG CAGTCTTTAT GCCATGGCGC AGATACTGAC CGTGCAATTG
ATGACATTGA CGCTGGTCAG CATGAATTCC CAGCGCATCG AACATGAATA CGCGATCAGC
GAATCACGCC TGCGAGACAG TGAGGCGCAG TTGCGCTCCA TCGGCGACAA CCTGCCCGAT
GGTTTCGTCT ATCAGTTCGA GATGGGCGAT GGCAAGCGGG CCTTCAGCTA CATCAGCGCG
GGTGTCGAGA AGATGCTCGG CCTCAGTCCC GCTGCATTGA GGGTCGATGC GCAGCCGCTG
TTCGCCTTGA TGGCGCCGGA TTCTCGTGCG CAATACCTGC AGGACGAAGC ACGCTGCCTG
CGCGAGCTGA CCGAATATGC CGGCGTGCTG CTGTTCAATC CGAGCGATGG ACGAAAAGTC
TGGTTGCACG TTCGCTCGGG GCCGATACGG CGCTTGAACG GCGAGACGGT CTGGGTCGGG
GTGGCGGTCG ACATCACCAA ACTCAAGCTG GCGGAAGCCG AGCTGGAGCG CCATCGAAAC
CACCTGGAGG CGATGGTCGA GGAGCGGACC GCCGCCTTGT CCGATGCCAA GCTGGCAGCA
GAAGCCGCCA ATCTCGCCAA GGGCAGTTTC CTGGCCAACA TGAGCCATGA AATCCGCACG
CCGATGAACG CCATCATCGG TCTATCCGCT CTCTTGCTCA GAAAACCACA GGAACCGGAT
ACCGCAGACA AGCTCGGTTT GATCGAGGCC TCCGGCAAAC ATCTGCTCGG CATCATCAAC
GACATCCTCG ACCTGTCGAA GATCGAGGCG GGCAAGTTCC ACCTGTCGCA AGAACGGCTG
GATGTTCGCG TACTGCCGGT CAACGTGTGC TCCATGGTGG CCGAGGCAGC CCATGCCAAG
GGCATCAAGC TCAAGACCGA ACTGGATTTC CTGCCTCCGC GACTGCTGGG CGATCTGACT
CGCATCACGC AAGCGCTGCT CAACCTCGTC AGCAACGCGA TCAAGTTCAC CAGGACGGGA
TCTGTGACCG TGCGCGCCGT CAGGGAAGAA GAGGATCAGG ATTCGATCCT GCTCCGTTTC
GAGGTCATCG ACACGGGGAT CGGAATCTCT GCGCAGGCCA TGAGCCGATT GTTTTCCCCA
TTCGAGCAGG CCGATGCCTC GACGGTTCGC AACTTTGGTG GAACCGGTCT TGGATTGGTG
ATCACCCGGC GGCTGGCTCA GTTGATGGGT GGGGATGCGG GGGCAGCCAG TGTTCTGGGT
GAAGGCAGCA CCTTCTGGTT CACGGTGCGC CTGAAGAAGA CGGACGTTGA AAACCTTGAC
TCGACCATGC CAACCGAGAA CGCGGCGGCC GTGCAATTGC AGCACAGGTG GGCCGGGACA
CGAATCTTGC TGGTCGAGGA CAACGAGATC AACCAGCAGG TGGCGCGGGC GATCCTGGAA
GAGGTCGGTC TGGTCTGCGA CCTGGCAGAA AACGGCGAAG AGGCCGTCGC GATGATCGGC
AAGGCCCGAC CGGGCACCTA CGCACTGGCA CTGATGGACA TGCAGATGCC CAGAATGGAC
GGCGTGACGG CCACCCAAGC CATTCGGCAG CTGGAAGGTG GCAAGGACAT TCCCATCGTG
GCCATGACGG CGAATGCATT CAATGACGAT GTGCAGCGGT GCCTGGCATC GGGCATGAAT
GACTTCCTGT TGAAGCCTGT TGACCCCGAC AAGCTCTATG ACACCCTGCT CAAGTGGCTT
GGCCCGTGA
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| Protein sequence | MDTATLLSTN ALLSSAAALV MFVVLRTRKT YPGFGFWTAG VACLALGAAM LVPGAMPQAW
IVRVLRNATL LGGLLLLLRG MLVFRGYQVS HRWEGLLAVI FFVVFGYYSL DPAQIDARIV
IYCVLAGILS ITTAIVTLRD RPPYFGSNDV MLALWMLVFA VLSFVRIAHQ LSHPDVNTAF
EALKGFGSLY AMAQILTVQL MTLTLVSMNS QRIEHEYAIS ESRLRDSEAQ LRSIGDNLPD
GFVYQFEMGD GKRAFSYISA GVEKMLGLSP AALRVDAQPL FALMAPDSRA QYLQDEARCL
RELTEYAGVL LFNPSDGRKV WLHVRSGPIR RLNGETVWVG VAVDITKLKL AEAELERHRN
HLEAMVEERT AALSDAKLAA EAANLAKGSF LANMSHEIRT PMNAIIGLSA LLLRKPQEPD
TADKLGLIEA SGKHLLGIIN DILDLSKIEA GKFHLSQERL DVRVLPVNVC SMVAEAAHAK
GIKLKTELDF LPPRLLGDLT RITQALLNLV SNAIKFTRTG SVTVRAVREE EDQDSILLRF
EVIDTGIGIS AQAMSRLFSP FEQADASTVR NFGGTGLGLV ITRRLAQLMG GDAGAASVLG
EGSTFWFTVR LKKTDVENLD STMPTENAAA VQLQHRWAGT RILLVEDNEI NQQVARAILE
EVGLVCDLAE NGEEAVAMIG KARPGTYALA LMDMQMPRMD GVTATQAIRQ LEGGKDIPIV
AMTANAFNDD VQRCLASGMN DFLLKPVDPD KLYDTLLKWL GP
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