| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3364 |
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| Symbol | |
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| ID | 6161051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3738503 |
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| End bp | 3740260 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666139 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001792387 |
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| Protein GI | 171060038 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAAT CATTCATCGA CCCCGGGACA ACGCTGTGGC GCGCCAGATG CCTGTTTATC
GATAATCTGC CGATGGAACC CCATTCGATG CCGCCCCTGC CGCCGGACGC CGACCTGCGC
CGGCTGGTCA ACTTCTCGGC CTCGGACGGC CGTATCTGGC TGGCCGGCCA CCGCATGCTG
CTGGTCCACG CCGAGGCGCT GGGCAGCCTG CGGCGCGAGC TGATGCAGAG CATCGGCCGC
GAGCAGACGC GCCGGGTGCT GATGCGCGCC GGCTACGCCG CGGGCCAGCG CGACGCGGCG
CTGGCGCGGC AGGTGCGCCC GGGCGCGTCG ATGTTCGACC TGTTCGCGGT CGGGCCACAG
CTGCACATGC TCGAAGGCGC GGTGCAGGTC ACGCCCGAAC GTTTCGAGCT CGACATGGCC
AGCGGCCACC ACGTCGGCGT GTTCCGCTGG GATCACTCGT GGGAGGTCGA GACCCATCTG
CGCGACTTCG GCCCGCAGGA CGAGCCGGTG TGCTGGATGC TGATCGGCTA CGCCTCGGGT
TACGTCAGCG CCTTCATGGG CCAGCGGGTG ATCTACCGCG AACTTCAATG CAGCGGCTGC
GGCCATGCGC ATTGCCGCAT CGAGGGCCGG CCGCAGTCGG CCTGGCCGGA CGGCGATCTG
CTGGCGCGCG ACTACGACCC CGATTCGCTG CTGGTGCGCA TCGAGGATCT GCAGTCCGAG
GTCGAGACGC TGCGCTCCAC CCTCGCGCCG CGTGACGACT TGGGCGAGCT GATCGGCCAG
TCACGCGCCT TCCAGCGTGC CGCCGAGCTG CTGCGCAAGG CCGCGGCCAC GCAGGTGACG
GTGCTGCTGA CCGGCGAGAC CGGGGTCGGC AAGGAGCGTT TTGCACGCGC CCTGCACGCG
ATGAGCACGC GCGCCGATCG GCCGTTCGTC GCGATCAACT GCGCCGCGCT GCCGGCCGAT
CTGATCGAGA GCGAGCTGTT CGGCGCCGAA AAAGGCGCCT ACACCGGCGC CGGTGCGGCG
CGCGCCGGGC GCTTCGAGCG CGCCGACGGC GGCACGCTGT TTCTCGACGA GCTGGGTGAG
CTGCCGCTGC CGGCGCAGGC CAAGCTGCTG CGCGTGCTGC AGCACGGCGA GATCGAGCGC
CTGGGCAGCA CGCAGGCGCG CCGCGTCGAC GTTCGGGTGG TGGCGGCGAC CAACGTCGAC
CTGGAGGCGG CGGTGGCGGC CGGGCGCTTC CGGCGCGACC TGATGTACCG GCTCAACGTC
TACCCGATCC GCATCCCGCC GCTGCGCGAG CGGGTCGAGG ACATCGAGCC GCTGGCGCTG
CACCTGCTGC AGCACTTCGC CACGCTGCAT CAGAAACGCG TGCAGGGCCT GACCGACCGC
GCGCTGGAGG CCATGCGCCA CTACGCCTGG CCGGGCAATG TGCGCGAACT CGAGAACCTG
ATCGAGCGCG GCATCATCGT CGCCGGCGCC GGCCAGCCGG TCGACATCGA CGACCTGTTC
CCGACCCCGC CGGGCCAGAC CACCGTGACG GTCAACGCCG CCGGTGCGTT GGAGCGCGGC
GCGCCGGCCC AGATCGACAC GCTCTACGAC GAGGTGCTGC GCCACGGCCT GAGCCTGGAT
GCACTCGAAG ACGGCCTGAT CCAGGAGGCC GTGCAGCGCA ACGGTGGCAA CCTGGCCGCC
GCCGCCCGGG CGCTCGGCCT GACCCGCCCG CAGCTGAGCT ACCGGCTCAG CCGCGTGCGC
GAACGCTCGC GCGATTGA
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| Protein sequence | MIKSFIDPGT TLWRARCLFI DNLPMEPHSM PPLPPDADLR RLVNFSASDG RIWLAGHRML
LVHAEALGSL RRELMQSIGR EQTRRVLMRA GYAAGQRDAA LARQVRPGAS MFDLFAVGPQ
LHMLEGAVQV TPERFELDMA SGHHVGVFRW DHSWEVETHL RDFGPQDEPV CWMLIGYASG
YVSAFMGQRV IYRELQCSGC GHAHCRIEGR PQSAWPDGDL LARDYDPDSL LVRIEDLQSE
VETLRSTLAP RDDLGELIGQ SRAFQRAAEL LRKAAATQVT VLLTGETGVG KERFARALHA
MSTRADRPFV AINCAALPAD LIESELFGAE KGAYTGAGAA RAGRFERADG GTLFLDELGE
LPLPAQAKLL RVLQHGEIER LGSTQARRVD VRVVAATNVD LEAAVAAGRF RRDLMYRLNV
YPIRIPPLRE RVEDIEPLAL HLLQHFATLH QKRVQGLTDR ALEAMRHYAW PGNVRELENL
IERGIIVAGA GQPVDIDDLF PTPPGQTTVT VNAAGALERG APAQIDTLYD EVLRHGLSLD
ALEDGLIQEA VQRNGGNLAA AARALGLTRP QLSYRLSRVR ERSRD
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